Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1776 89.7 4e-13 seq1541 89.7 4e-13 seq1075 82.4 6e-11 >seq1776 Length=305386 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | |||||||| || || ||| | || |||| | | Sbjct 213865 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 213924 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| |||||||| || | ||| || || Sbjct 213925 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCCCCTGACCAG 213984 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | || || || ||||||||||||| ||| || | ||||||||||| Sbjct 213985 CAGAGGCTTATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCGGATTACAAT 214044 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGG 110498 || || || || || || | ||| ||||| | || || |||||| Sbjct 214045 ATCCAGAAGGAGTCCACTCTTCACTTGGTGCTCAGGCT--GAGGGG 214088 >seq1541 Length=115782 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | ||||| || ||||| ||| | || |||| | | Sbjct 45217 ATGCAGATCTTTGTGAAGACCCTGACCGGGAAGACCATCACCCTGGAGGTGGAGTCAAGC 45158 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | ||||| |||||| ||||| ||||| | || || || Sbjct 45157 GACACCATCGACAACGTAAAGGCCAAGATTCAGGACAAGGAAGGAATCCCTCCTGACCAG 45098 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | || || || ||||||||||||| |||||| |||| || || ||| Sbjct 45097 CAGAGGCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGAACCCTGGCTGACTATAAC 45038 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || | ||| ||||| | || ||||| || || Sbjct 45037 ATCCAGAAGGAGTCCACTCTTCACTTGGTGCTCAGGCTGCGGGGTGG 44991 >seq1075 Length=42261 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || || || || | |||||||| ||| ||||| |||| | Sbjct 14653 AATGCAAATTTTCGTTCGTACATTGACAGCAAAAACCATAACCCTCGAAGTGGAGTCATC 14712 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || ||| ||||| ||||| || || | ||| || || Sbjct 14713 AGACACCATTGACACTGTCAAAGCCAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCA 14772 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || || | || ||||| ||||||||||| | | | || |||| |||||||| Sbjct 14773 GCAGCGCCTCATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCTGATTACAA 14832 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| || ||||| ||||| | || |||| |||||||| ||||| || Sbjct 14833 CATCCAGAAAGAGTCTACTCTCCATTTGGTATTAAGACTCCGAGGAGG 14880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412832472846302