Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1776 96.9 3e-15 seq1541 95.1 1e-14 seq1075 82.4 6e-11 >seq1776 Length=305386 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| ||||||| |||||| || ||||| ||||||| || || |||||||| Sbjct 214485 GATCAGCAGAGGCTTATTTTTGCGGGCAAGCAGCTTGAGGACGGCAGGACCCTGGCGGAC 214544 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||||||| |||||||| || | || ||||| Sbjct 214545 TACAACATTCAGAAGGAGTCCACCCTCCATCTGGTG 214580 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || |||||||| | || ||||| ||||| || | || ||| | || Sbjct 216238 ATGCAAATCTTCGTCAAAACCCTCACTGGCAAGACCATCACGCTTGAGGTCGAGTCCAGC 216297 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || |||||| ||||| || ||| | ||| || ||| Sbjct 216298 GACACCATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCAG 216357 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | || || || ||| ||||||| | | || |||| ||||||||| Sbjct 216358 CAGAGGTTGATCTTCGCCGGGAAGCAGTTGGAGGATGGCCGCACTCTGGCCGACTACAAC 216417 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| || ||||| ||||| Sbjct 216418 ATTCAGAAGGAGTCGACCCTGCACTTGGTG 216447 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| || || ||| | || |||| | || Sbjct 213865 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 213924 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || |||||| || ||||| || | ||| || ||| Sbjct 213925 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCCCCTGACCAG 213984 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | || || || ||||||||||| | || || | ||||| ||||| Sbjct 213985 CAGAGGCTTATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCGGATTACAAT 214044 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 214045 ATCCAGAAGGAGTCCACTCTTCACTTGGTG 214074 >seq1541 Length=115782 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || || || ||||| ||| | || |||| | || Sbjct 45217 ATGCAGATCTTTGTGAAGACCCTGACCGGGAAGACCATCACCCTGGAGGTGGAGTCAAGC 45158 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | ||||| |||||| || || ||||| | || || ||| Sbjct 45157 GACACCATCGACAACGTAAAGGCCAAGATTCAGGACAAGGAAGGAATCCCTCCTGACCAG 45098 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || ||||||||||| | || ||| |||| ||||| ||| Sbjct 45097 CAGAGGCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGAACCCTGGCTGACTATAAC 45038 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| || | ||| ||||| | || |||| || || Sbjct 45037 ATCCAGAAGGAGTCCACTCTTCACTTGGTGCTCAGGCTGCGGGGTGG 44991 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || |||||||| | || ||||| ||||| || | || ||| | || Sbjct 43277 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACGCTTGAGGTTGAGTCCAGC 43218 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || |||||| || || || ||| | || || ||| Sbjct 43217 GACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAG 43158 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||||| || || || ||| ||||||| | || |||| ||||||||| Sbjct 43157 CAGAGGCTTATTTTCGCCGGCAAGCAGTTGGAGGATGGGCGTACCCTGGCTGACTACAAC 43098 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || ||||| ||||| Sbjct 43097 ATCCAGAAGGAGTCGACCCTGCACTTGGTG 43068 >seq1075 Length=42261 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| || || || |||| |||||||| ||| ||||| |||| | Sbjct 14653 AATGCAAATTTTCGTTCGTACATTGACAGCAAAAACCATAACCCTCGAAGTGGAGTCATC 14712 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | || ||| ||||| || || || || | ||| || || Sbjct 14713 AGACACCATTGACACTGTCAAAGCCAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCA 14772 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || ||||| ||||||||||||| | || |||| || ||||| Sbjct 14773 GCAGCGCCTCATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCTGATTACAA 14832 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || || |||||||| | || |||| || ||| | ||||| || Sbjct 14833 CATCCAGAAAGAGTCTACTCTCCATTTGGTATTAAGACTCCGAGGAGG 14880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398867981581846