Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq1813 572 2e-158 seq1796 86.0 8e-12 >seq1813 Length=181482 Score = 572 bits (634), Expect = 2e-158 Identities = 746/1020 (73%), Gaps = 9/1020 (1%) Strand=Plus/Plus Query 178951 GATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 179010 |||||||||||| ||| ||| | ||||| ||||| |||||||| || | || || || Sbjct 117406 GATGACTGGCTTCGTCGTGATAGGTTTGTATTTGTTGGTTGGTCAGGTTTACTT-TTGTT 117464 Query 179011 CCCAC-TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTG 179069 ||| |||||| |||| |||||||||||||||| || ||| ||||||| || || Sbjct 117465 CCCTTGTGCTTACTTTGCTCTTGGCGGTTGGCTTACCGGAACAACTTTTGTAACATCATG 117524 Query 179070 GTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTG 179128 ||| || ||||| | || || || || ||||| || ||| |||||| | || || || | Sbjct 117525 GTATACTCATGGGTTGGCAAGCTCTTACCTTGAGGGCTGC-AACTTTTTGACTGCTGCCG 117583 Query 179129 TCTCGACGCCTGCTGAT-GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179187 | || || || ||| | ||| ||| |||||||||| | ||| ||||| || || || Sbjct 117584 TGTCAACCCCAGCTAACAGCT-TGGCTCATTCTCTTTTACTATGGTGGGGGCCGGAAGCT 117642 Query 179188 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCAC 179247 || || |||| || ||||| ||||| || || || |||| ||| || ||| | || Sbjct 117643 CAAGGAGATTTTACTCGTTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTTGCAT 117702 Query 179248 GGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCA-TCGG 179306 ||||| || | | | ||||||||||||||||| || |||||| |||| || ||| || Sbjct 117703 GGTGCTTTTGGCTTGATTGGATTCATGCTTCGCCAATTTGAATTGGCTCG-CTCTGTCCA 117761 Query 179307 TATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATT 179366 | || ||||| || || ||||||||| |||| |||||| | || || || ||| || Sbjct 117762 ATTACGACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCAGTTTTTGTATCTGTGTT 117821 Query 179367 TCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGC 179426 | || || || ||||| ||||| ||||||||||||| ||| ||||| ||||| || Sbjct 117822 CTTAATTTATCCTCTTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGCAGC 117881 Query 179427 GATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCA 179486 ||||| | ||| | | || || |||||||| || ||||||||||| ||||| || || Sbjct 117882 AATCTTCCGTTTCATTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTTCCA 117941 Query 179487 CATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAAC 179546 |||||||| || || ||| | | || | |||||| |||| ||| |||||||| | ||| Sbjct 117942 TATGATGGGTGTGGCTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGCAAC 118001 Query 179547 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTC 179606 ||| || || || |||| |||||||||||| || ||||| || || || || | Sbjct 118002 TGTGGAAAACACTTTGTTTGAAGATGGAGATGGTGCGAACACTTTCCGTGCCTTTAACCC 118061 Query 179607 TACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTT 179666 ||| || || || || ||||| |||||||| || |||||||| ||||| |||||||| Sbjct 118062 TACACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 118121 Query 179667 CGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCAT 179726 || || | ||| || || || ||| | || ||||||| ||| ||||||||||| | Sbjct 118122 TGGTATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTTCCTGTAAC 118181 Query 179727 GGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGA 179786 ||| |||||| | | ||||| | | || || ||||| |||||| | || ||||| Sbjct 118182 GGGGCTTTGGATGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGAGCATATGA 118241 Query 179787 TTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAA 179846 |||||| ||||||||| |||| |||||||||||||| || || || || || ||||| Sbjct 118242 TTTTGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTTTACACAAA 118301 Query 179847 GAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGA 179906 ||||||||| | ||||| || | || || ||| |||| || ||||| || ||||| Sbjct 118302 AAACATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAGCCTCATGA 118361 Query 179907 AAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACTGTGATTCAATCTCTA 179966 ||| | | ||||| || || |||||||| |||| ||||| || | || || ||||| Sbjct 118362 AAATCTTGTATTCCCTGAGGAGGTCCTACCACGTGGAAACGCTCTTTAATGGAA-CTCTA 118420 Score = 470 bits (520), Expect = 2e-127 Identities = 499/657 (76%), Gaps = 1/657 (0%) Strand=Plus/Plus Query 177885 TATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTT 177944 || ||||| ||||||||||| ||| | |||| | || ||||| || ||||| ||| Sbjct 72437 TACATGGGCCGTGAGTGGGAGCTTAGCTTCCGTTTGGGCATGCGTCCTTGGATTGCTGTA 72496 Query 177945 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAGTCTATCCTTTCGGTCAA 178004 || |||||||| || |||||||| || ||||||| || | |||| ||| | |||||| Sbjct 72497 GCTTACTCTGCTCCGGTTGCAGCTGCTACCGCAGTGTTCTTGATCTACCCTATTGGTCAA 72556 Query 178005 GGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 178064 || ||||| |||| |||||||||||| || || || ||||| |||| ||| |||| Sbjct 72557 GGCAGCTTCTCTGATGGTATGCCTCTTGGCATTTCCGGCACTTTCAACTTTATGATTGTG 72616 Query 178065 TTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTA 178124 |||||||| || ||||| || ||||||||||| ||||||||||| ||||| ||||| || Sbjct 72617 TTCCAAGCTGAGCACAACATTCTTATGCACCCTTTCCACATGCTTGGTGTGGCTGGCGTG 72676 Query 178125 TTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGT 178184 || || || ||||| || |||||||||||| | |||||||| | ||||| Sbjct 72677 TTTGGCGGCTCTCTGTTTAGTGCTATGCATGGTTCCTTGGTTACTTCCAGCTTAATCCGT 72736 Query 178185 GAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACA 178244 ||||| || |||| ||||| ||| |||||||||||| || ||||||| ||||| Sbjct 72737 GAGACTACTGAAAACGAGTCTGCTAACGCTGGTTACAAGTTTGGTCAAGAAGGTGAAACT 72796 Query 178245 TATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTC 178304 || |||||||| || || || |||||||| ||||| | || |||||||| || ||| Sbjct 72797 TACAACATCGTGGCTGCTCACGGTTACTTTGGTCGCCTAATTTTCCAATACGCTAGCTTC 72856 Query 178305 AACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTC 178364 |||||||| ||||| ||||||||||||| || || ||||||||||| || |||||||| Sbjct 72857 AACAACTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGCATCTGGTTT 72916 Query 178365 ACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCC 178424 || || |||||| | ||| ||||| || ||||| || || |||||||||||||| || Sbjct 72917 ACTGCTCTTGGTATCAGCACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAATCT 72976 Query 178425 ATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGT 178484 | | ||| | ||||| ||||| ||||||| ||||| ||| | |||||||||| Sbjct 72977 GTGGTTGACAGCCAAGGCCGTGTGATCAACACTTGGGCTGACATCATCAACCGTGCAAAC 73036 Query 178485 CTCGGCATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGATCTTGC 178541 || || |||||||| |||||||| | || || || |||||||| ||||| || || Sbjct 73037 CTTGGTATGGAAGTGATGCACGAGCGTAA-CGCTCACAACTTCCCTCTTGACCTAGC 73092 Score = 205 bits (226), Expect = 1e-47 Identities = 217/286 (76%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 44484 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 44425 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCGTCGCTGCTCCC 177677 ||||| || || || ||| | ||||| | || || | |||||| |||||||||| Sbjct 44424 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCCT 44365 Query 177678 CCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 177737 || ||||||||||| || || ||||| || || ||||||| | |||||||||||||| Sbjct 44364 CCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAAC 44305 Query 177738 ATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 177797 |||||||||||||| || | || | || || ||||||||||||||||| || ||| Sbjct 44304 ATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTATC 44245 Query 177798 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 177843 ||||| || || || |||||||| ||||| || ||||| || |||| Sbjct 44244 TGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 44199 Score = 205 bits (226), Expect = 1e-47 Identities = 217/286 (76%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 134874 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 134933 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCGTCGCTGCTCCC 177677 ||||| || || || ||| | ||||| | || || | |||||| |||||||||| Sbjct 134934 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCCT 134993 Query 177678 CCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 177737 || ||||||||||| || || ||||| || || ||||||| | |||||||||||||| Sbjct 134994 CCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAAC 135053 Query 177738 ATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 177797 |||||||||||||| || | || | || || ||||||||||||||||| || ||| Sbjct 135054 ATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTATC 135113 Query 177798 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 177843 ||||| || || || |||||||| ||||| || ||||| || |||| Sbjct 135114 TGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 135159 >seq1796 Length=400242 Score = 86.0 bits (94), Expect = 8e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 138508 GAACAAATCTTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGT 138567 ||||||| | | ||| |||||||||| | |||||| || || ||||| || || || Sbjct 28696 GAACAAACCCTCGACATTGCTGATGATGTGATCATCCTCGACGCCGCTGAGGAGGCCGGA 28755 Query 138568 ATTGATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTT 138627 || || || |||||||| || | ||||| || || || | || ||||| || ||| Sbjct 28756 ATCGACCTGCCCTACTCATGCAGGGCTGGCGCTTGCTCATCTTGCGCTGGCAAG---GTT 28812 Query 138628 GAA---GGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCA 138684 || || || || || | |||||||||||| | ||||| ||||| || | || Sbjct 28813 GAGAGCGGCACCGTTGACTTGGGGGACCAGTCTTTCTTGGATGACGACCAGGTTTCCGCT 28872 Query 138685 GGATTTATCATGACTTGCGTAGCATACCCCAC 138716 |||| ||| | || ||| || |||||||| Sbjct 28873 GGATACATCCTCACATGCACTGCCTACCCCAC 28904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605653466496240