Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1541 100 2e-16 seq1776 86.0 4e-12 seq1075 82.4 5e-11 >seq1541 Length=115782 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| | | |||||| || || || ||| || || |||||||| || | Sbjct 43050 ACCACCCCTCAGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 43109 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || ||||| || || ||||| ||||| | | |||||| ||| | || Sbjct 43110 CAGGGTACGCCCATCCTCCAACTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCTGGTGG 43169 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| || || | ||| ||| | ||||||||| || || | Sbjct 43170 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CATTGTCGATGGTGTCGCTGGACTCAA 43228 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| |||||| || || || || | ||||| || ||||||||||| Sbjct 43229 CCTCAAGCGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 43277 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || ||||||||||| | || || || | || || Sbjct 42840 CACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTC 42899 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 ||| || || ||||||||||||| | |||||| || |||| | ||| || || || Sbjct 42900 CAACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTATCCTG 42959 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||| || ||| |||| || | ||||||||| || || || | ||| || || | Sbjct 42960 AATCTTAGCCTTC-ACATTATCAATGGTGTCGCTGCTCTCAACCTCTAGCGTAATGGTCT 43018 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || ||||||||||||||| Sbjct 43019 TCCCAGTCAGGGTCTTGACAAAGATCTGCATA 43050 >seq1776 Length=305386 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || |||||| ||| || || || |||||||| | || || | | || || Sbjct 214074 CACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTGCCATCCTC 214015 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || || || || | | |||||| || | || | || |||||||| Sbjct 214014 CAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCCTCTTTGTCCTG 213955 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||| || |||| | | ||| | ||||||||| || ||||| |||| ||||| || | Sbjct 213954 AATCTTGGCCTTCA-CGTTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCT 213896 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||||||||| Sbjct 213895 TGCCGGTCAGGGTCTTCACAAAGATCTGCAT 213865 >seq1075 Length=42261 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 33537 TAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTC 33596 ||| |||||||| ||||| |||||| || ||||||||||| | || ||||| |||| Sbjct 14866 TAATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCGTC 14807 Query 33597 GTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 |||| || || ||||| || || | |||||||| ||| | || | || || ||||| Sbjct 14806 CTCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATCCCCTCCTTGTC 14747 Query 33657 GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCG 33715 || || | || ||| ||| | |||||| ||| ||||| || | || || | Sbjct 14746 CTGGATCTT-GGCTTTGACAGTGTCAATGGTGTCTGATGACTCCACTTCGAGGGTTATGG 14688 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||| || || || || || ||||| Sbjct 14687 TTTTTGCTGTCAATGTACGAACGAAAATTTGCAT 14654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328696732970880