Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1776 105 2e-17 seq1075 104 6e-17 seq1541 91.5 3e-13 >seq1776 Length=305386 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| | || ||||| ||| Sbjct 213868 CAGATCTTTGTGAAGACCCTGACCGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGAC 213927 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || ||||| |||||| || ||| || Sbjct 213928 ACCATCGACAACGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCCCCTGACCAGCAG 213987 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || ||||||||||| || |||||| |||| ||||| ||||| | || |||||||| || Sbjct 213988 AGGCTTATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCGGATTACAATATC 214047 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| ||||||||| Sbjct 214048 CAGAAGGAGTCCACTCTTCAC 214068 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTG--ACACAGTCGAA 206241 |||||| ||||| || || || ||||| | || || || || | | |||| |||| Sbjct 216252 CAAAACCCTCACTGGCAAGACCATCACGCTTGAGGTCGA--GTCCAGCGACACCATCGAC 216309 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 || ||| |||||||| || || || || ||| || ||| || || | ||| Sbjct 216310 AATGTCAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCAGCAGAGGTTGATC 216369 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 |||||||| ||||||||||| ||||| | ||| ||||||| |||||| | ||||| ||| Sbjct 216370 TTCGCCGGGAAGCAGTTGGAGGATGGCCGCACTCTGGCCGACTACAACATTCAGAAGGAG 216429 Query 206362 TCTACTCTTCAC 206373 || || || ||| Sbjct 216430 TCGACCCTGCAC 216441 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 206296 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 206355 || ||||| ||||| ||||||||||| ||||| ||||| |||| || |||||| | ||| Sbjct 214974 CTCATCTTTGCCGGCAAGCAGTTGGAGGATGGGAGGACCCTGGCTGACTACAACATTCAG 215033 Query 206356 AAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || |||||||| || || || |||||||| || Sbjct 215034 AAGGAGTCTACCCTGCATCTGGTTTTGAGGCT 215065 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||||||||| ||||| ||||||| ||| || || || | ||||| ||||| |||||||| Sbjct 214068 GTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTGCCATCCTCCAGCTG 214009 Query 204829 CTTTCCGGCGAAGATAAGCC 204848 ||| || ||||||||||||| Sbjct 214008 CTTGCCAGCGAAGATAAGCC 213989 >seq1075 Length=42261 Score = 104 bits (114), Expect = 6e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 |||| |||||| || || | |||||||| || ||||| | || | || ||||| Sbjct 14678 ACAGCAAAAACCATAACCCTCGAAGTGGAGTCATCAGACACCATTGACACTGTCAAAGCC 14737 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||| || || || || || ||| || ||| || | || ||||||||||| || Sbjct 14738 AA-GATCCAGGACAAGGAGGGGATTCCCCCAGACCAGCAGCGCCTCATCTTCGCCGGTAA 14796 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||| |||| || || | || |||| ||||||||| ||||||||||||||||||| || Sbjct 14797 GCAGCTGGAGGACGGCCGCACGCTGGCTGATTACAACATCCAGAAAGAGTCTACTCTCCA 14856 Query 206373 CCTTGTTTTGAGACTTCGA 206391 | || || ||||| ||| Sbjct 14857 TTTGGTATTAAGACTCCGA 14875 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||| ||||| || || | || ||||||||||||||||||| || || ||||||| || Sbjct 14875 TCGGAGTCTTAATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAGCGT 14816 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | || || ||||||||||| ||||||||||| || || || || Sbjct 14815 GCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTG 14771 >seq1541 Length=115782 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTG-- 206230 ||||| || |||||| ||||| || || || ||||| | || || || || | | Sbjct 43274 CAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACGCTTGAGGTTGA--GTCCAGCG 43217 Query 206231 ACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290 |||| |||| || ||| |||||||| || || || || || || ||| | Sbjct 43216 ACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGC 43157 Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350 | || ||||| |||||||| ||||||||||| ||||| | || |||| || |||||| Sbjct 43156 AGAGGCTTATTTTCGCCGGCAAGCAGTTGGAGGATGGGCGTACCCTGGCTGACTACAACA 43097 Query 206351 TCCAGAAAGAGTCTACTCTTCAC 206373 ||||||| ||||| || || ||| Sbjct 43096 TCCAGAAGGAGTCGACCCTGCAC 43074 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||||||||| ||||| ||||||| ||||||||||||| || || ||||| |||||||| Sbjct 45014 GTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCCAGGGTTCTGCCATCCTCCAGCTG 45073 Query 204829 CTTTCCGGCGAAGATAAGCC 204848 ||| || |||||||| |||| Sbjct 45074 CTTGCCAGCGAAGATGAGCC 45093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181793332268694