Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1541 125 6e-24 seq1776 123 2e-23 seq1800 104 2e-17 seq1075 102 7e-17 >seq1541 Length=115782 Score = 125 bits (138), Expect = 6e-24 Identities = 171/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | ||| | |||||| || | || |||||| || ||||| || || ||| Sbjct 44991 CCACCCCGCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCC 45050 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || ||||||||||| || || || || | || ||||||||| | ||| Sbjct 45051 AGGGTTCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGGG 45110 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| ||||| ||| | |||| | | |||||||| || ||||| Sbjct 45111 ATTCCTTCCTTGTCCTGAATCTTGGCCTTTA-CGTTGTCGATGGTGTCGCTTGACTCCAC 45169 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCG 35744 ||||| ||||| || || || |||| || |||||||| |||||||| || ||| Sbjct 45170 CTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATGATGGGCG 45225 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| || | ||| ||| | || |||| |||||| || ||||| Sbjct 42858 CTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCCAACTGCTTGCCGGCAAA 42917 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | | |||||| ||| ||||| ||||| | | Sbjct 42918 AATCAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTATCCTGAATCTTAGCCTTCACATT 42977 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| || ||||| | ||| || || || || |||| || || || Sbjct 42978 ATCAATGGTGTCGCTGCTCTCAACCTCTAGCGTAATGGTCTTCCCAGTCAGGGTCTTGAC 43037 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 43038 AAAGATCTGCAT 43049 Score = 98.7 bits (108), Expect = 9e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||||| || | ||| |||||| ||||||||||| || ||| Sbjct 43897 CCACCACGCAGGCGCAACACCAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGCC 43956 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || ||| | || || |||||||| || ||||| ||||||||||||||||| | ||| Sbjct 43957 AGAGTGCGCCCATCCTCAAGCTGCTTGCCAGCAAAAATCAACCGCTGCTGGTCAGGGGGA 44016 Query 35630 ACGC 35633 | || Sbjct 44017 ATGC 44020 >seq1776 Length=305386 Score = 123 bits (136), Expect = 2e-23 Identities = 177/248 (71%), Gaps = 1/248 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | | ||| | |||||| || | || |||||| ||||||||||| |||||| Sbjct 216464 CCACCCCTCAGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCC 216405 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||| || || || ||||||| ||||||||| | ||| Sbjct 216404 AGAGTGCGGCCATCCTCCAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 216345 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||| ||| ||||| ||| | | | | | |||||||| || || ||| Sbjct 216344 ATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACC 216285 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT-TCTGTGCGCACA 35748 || | |||||| || || || || | ||||| || || || ||||| || ||||| | Sbjct 216284 TCAAGCGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATTTGCATACCTCCGCGCAGA 216225 Query 35749 CACACCAC 35756 | || ||| Sbjct 216224 CGCAGCAC 216217 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 35521 CCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTC 35580 ||| | |||||| || | || |||||| || || |||||||| || | ||| | | Sbjct 214080 CCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTGCC 214021 Query 35581 GTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTT 35640 || ||||||||||| || || || || | || ||||||||| | |||| | ||| || Sbjct 214020 ATCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCCTCTTT 213961 Query 35641 GTCCATGATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGA 35699 |||| ||||| ||||| |||| | | ||||||||||| |||||||| | |||| Sbjct 213960 GTCCTGAATCTTGGCCTTCAC-GTTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGA 213902 Query 35700 TCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || || |||| || |||||||| |||||||| Sbjct 213901 TAGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 213865 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || || | || || |||| ||| | ||| |||||| || |||||||| || ||| Sbjct 215642 CCGCCCCGCAGCCGCAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 215583 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| ||| |||| || |||||||| || ||||| |||| |||||||||||| | |||| Sbjct 215582 AGGGTGCGCCCGTCCTCGAGCTGCTTCCCAGCAAAAATCAGCCGCTGCTGGTCAGGAGGA 215523 Query 35630 A 35630 | Sbjct 215522 A 215522 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || | | |||||| |||| ||| | ||| |||||| ||||||||||| || | Sbjct 215076 TTCCTCCCCTGAGCCTCAAAACCAGATGCAGGGTAGACTCCTTCTGAATGTTGTAGTCAG 215017 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| ||| | | | || |||| |||||| || ||||| || | ||||||||||||| | Sbjct 215016 CCAGGGTCCTCCCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGG 214957 Query 35628 GAACGC 35633 ||| || Sbjct 214956 GAATGC 214951 >seq1800 Length=440711 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || || || | ||| |||| ||| | || ||||| | |||||||||||| || ||| Sbjct 106646 CCTCCTCGCAAGCGCAAGACCAGATGCAGGGTGCTCTCGTCTTGAATGTTGTAGTCCGCC 106705 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| ||| | || ||||||||||| |||||||| || | |||||| || |||| |||| Sbjct 106706 AGGGTGCGCCCATCCTCCAGCTGCTTTCCCGCAAAGATGAGCCGCTGTTGATCCGGAGGA 106765 Query 35630 ACGCTCTCCTTGTCC 35644 | || |||| | ||| Sbjct 106766 ATGCCCTCCATATCC 106780 >seq1075 Length=42261 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 || || |||||||| | ||| ||| || || ||||||||||| |||| || || || Sbjct 14868 CTTAATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCG 14809 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || |||||||||||||| || || || | ||||||||||| | |||| | ||||||| Sbjct 14808 TCCTCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATCCCCTCCTTG 14749 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| |||||| || | ||| | | ||||| || ||||| || | || || Sbjct 14748 TCCTGGATCTTGGCTTTGACAGTGTCAATGGTGTCTGATGACTCCACTTCGAGGGTTATG 14689 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||||| | ||||| || || || || |||||| Sbjct 14688 GTTTTTGCTGTCAATGTACGAACGAAAATTTGCATT 14653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450783378255120