Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq1813 598 5e-166 >seq1813 Length=181482 Score = 598 bits (662), Expect = 5e-166 Identities = 745/1010 (74%), Gaps = 8/1010 (1%) Strand=Plus/Plus Query 159911 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTT 159970 || ||||||||| || ||| | || || |||||||| ||||| || | ||| || || Sbjct 117406 GATGACTGGCTTCGTCGTGATAGGTTTGTATTTGTTGGTTGGTCAGGTTTACTT-TTGTT 117464 Query 159971 CCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTG 160029 ||| |||||| ||||| |||||||||||||||| ||||||||||| | ||| || Sbjct 117465 CCCTTGTGCTTACTTTGCTCTTGGCGGTTGGCTTACCGGAACAACTTTTGTAACATCATG 117524 Query 160030 GTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACAGCGTCAG 160088 |||||| ||||| | || || || || |||||||| ||||| |||| | || || | | Sbjct 117525 GTATACTCATGGGTTGGCAAGCTCTTACCTTGAGGGCTGCAA-CTTTTTGACTGCTGCCG 117583 Query 160089 TTAGCACTCCAGCTGAC-GCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCT 160147 | || |||||| || ||| ||| |||||||||| | || ||||| || || ||| Sbjct 117584 TGTCAACCCCAGCTAACAGCT-TGGCTCATTCTCTTTTACTATGGTGGGGGCCGGAAGCT 117642 Query 160148 CAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCAT 160207 ||||| ||||| | ||| ||||| || || || |||| |||||| || | ||| Sbjct 117643 CAAGGAGATTTTACTCGTTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTTGCAT 117702 Query 160208 GGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTCA-TCGG 160266 ||||| || | | | |||||||||||||| || || |||||| |||| || ||| || Sbjct 117703 GGTGCTTTTGGCTTGATTGGATTCATGCTTCGCCAATTTGAATTGGCTCG-CTCTGTCCA 117761 Query 160267 TATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATT 160326 | || ||||| || || ||||| || ||||| |||||| | || ||||| || || Sbjct 117762 ATTACGACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCAGTTTTTGTATCTGTGTT 117821 Query 160327 CCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGC 160386 | | || || || | ||||| || ||||||| || ||||| ||||| || ||||| Sbjct 117822 CTTAATTTATCCTCTTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGCAGC 117881 Query 160387 AATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCA 160446 |||||| | ||| | ||||| | ||||| ||||| |||||||| |||||||| ||||| Sbjct 117882 AATCTTCCGTTTCATTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTTCCA 117941 Query 160447 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTAC 160506 ||||||||| || |||||| | |||||| || || ||| |||| || ||||||| || Sbjct 117942 TATGATGGGTGTGGCTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGCAAC 118001 Query 160507 TGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTC 160566 ||| || ||||| ||| |||||||||||| || || || || || ||| | | Sbjct 118002 TGTGGAAAACACTTTGTTTGAAGATGGAGATGGTGCGAACACTTTCCGTGCCTTTAACCC 118061 Query 160567 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 160626 |||||| ||||| || ||||| ||||| ||||||||||| |||||||| |||||||| Sbjct 118062 TACACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 118121 Query 160627 CGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 160686 |||||||| ||||| ||||| || ||||||||||| || ||| | ||||| ||||| | Sbjct 118122 TGGTATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTTCCTGTAAC 118181 Query 160687 GGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGA 160746 ||| ||||||| | ||||| | | |||||||||||||||||| | || || || Sbjct 118182 GGGGCTTTGGATGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGAGCATATGA 118241 Query 160747 TTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAA 160806 ||| || |||||||||| |||| ||||||||||| |||||||| || || ||||| || Sbjct 118242 TTTTGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTTTACACAAA 118301 Query 160807 GAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGA 160866 ||||| || | ||||| || | || || ||| | || || || || || ||||| Sbjct 118302 AAACATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAGCCTCATGA 118361 Query 160867 GAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 || || | ||||| || || || || || | || ||||| ||||||| Sbjct 118362 AAATCTTGTATTCCCTGAGGAGGTCCTACCACGTGGAAACGCTCTTTAAT 118411 Score = 493 bits (546), Expect = 1e-134 Identities = 506/659 (77%), Gaps = 4/659 (1%) Strand=Plus/Plus Query 158706 TATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTA 158765 || ||||| ||||| ||||| ||| | ||| || || ||||| || ||||| |||| Sbjct 72437 TACATGGGCCGTGAGTGGGAGCTTAGCTTCCGTTTGGGCATGCGTCCTTGGATTGCTGTA 72496 Query 158766 GCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158825 || || ||||| || || || || || | || || ||| | |||| ||| | |||||| Sbjct 72497 GCTTACTCTGCTCCGGTTGCAGCTGCTACCGCAGTGTTCTTGATCTACCCTATTGGTCAA 72556 Query 158826 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158885 || ||||| |||| |||||||||||| || || || ||||| |||| ||| |||| Sbjct 72557 GGCAGCTTCTCTGATGGTATGCCTCTTGGCATTTCCGGCACTTTCAACTTTATGATTGTG 72616 Query 158886 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 158945 |||||||| || |||||||| ||||||||||| ||||| ||||| ||||| ||||| || Sbjct 72617 TTCCAAGCTGAGCACAACATTCTTATGCACCCTTTCCACATGCTTGGTGTGGCTGGCGTG 72676 Query 158946 TTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGT 159005 || || || ||||| || |||||||||||| | ||||||||| | | ||| Sbjct 72677 TTTGGCGGCTCTCTGTTTAGTGCTATGCATGGTTCCTTGGTTACTTCCAGCTTAATCCGT 72736 Query 159006 GAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACA 159065 || || ||||||| ||||| ||| |||||||||||| || ||||||| ||||| Sbjct 72737 GAGACTACTGAAAACGAGTCTGCTAACGCTGGTTACAAGTTTGGTCAAGAAGGTGAAACT 72796 Query 159066 TATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 159125 || || ||||| || || || |||||||| ||||| | || |||||||||||| ||| Sbjct 72797 TACAACATCGTGGCTGCTCACGGTTACTTTGGTCGCCTAATTTTCCAATACGCTAGCTTC 72856 Query 159126 AACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTC 159185 |||||||| ||||| |||||||||||||| ||||| |||||||| || ||||||||||| Sbjct 72857 AACAACTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGCATCTGGTTT 72916 Query 159186 ACCGCCCTTGGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGT 159243 || || |||| || ||| || ||||| |||||||| |||||||||||||||||||| | Sbjct 72917 ACTGCTCTTG--GTATCAGCACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAAT 72974 Query 159244 CCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAG 159303 | | |||| | || || |||||| | ||||| ||||| || | | ||||||||| Sbjct 72975 CTGTGGTTGACAGCCAAGGCCGTGTGATCAACACTTGGGCTGACATCATCAACCGTGCAA 73034 Query 159304 GTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 159362 || ||||||||||| ||||| ||||||||||| ||||||||||| || ||||| ||| Sbjct 73035 ACCTTGGTATGGAAGTGATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTAGCT 73093 Score = 217 bits (240), Expect = 2e-51 Identities = 222/287 (77%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 44484 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 44425 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATC-TGTTTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || || || ||| | |||||| | ||||| || | |||||| |||||||||| Sbjct 44424 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 44366 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 |||||||||||||| || || ||||| || || ||||||| | ||||||||||||| Sbjct 44365 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 44306 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 ||||||||||||||| || | || | || || ||||||||||||||||| || || Sbjct 44305 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 44246 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 158664 |||||| || || || |||||||| ||||| || ||||| || |||| Sbjct 44245 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 44199 Score = 217 bits (240), Expect = 2e-51 Identities = 222/287 (77%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 134874 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 134933 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATC-TGTTTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || || || ||| | |||||| | ||||| || | |||||| |||||||||| Sbjct 134934 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 134992 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 |||||||||||||| || || ||||| || || ||||||| | ||||||||||||| Sbjct 134993 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 135052 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 ||||||||||||||| || | || | || || ||||||||||||||||| || || Sbjct 135053 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 135112 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 158664 |||||| || || || |||||||| ||||| || ||||| || |||| Sbjct 135113 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 135159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552461072661120