Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq1813 553 2e-152 seq1796 82.4 9e-11 >seq1813 Length=181482 Score = 553 bits (612), Expect = 2e-152 Identities = 728/1001 (73%), Gaps = 6/1001 (1%) Strand=Plus/Plus Query 180033 GACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTT 180092 || ||||||||| || || | ||||||||||| || ||||| || |||| || || Sbjct 117406 GATGACTGGCTTCGTCGTGATAGGTTTGTATTTGTTGGTTGGTCAGGTTTACTT-TTGTT 117464 Query 180093 CCCAC-TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTG 180151 ||| |||||| |||| |||||||||||||||| || ||| ||||||| || || Sbjct 117465 CCCTTGTGCTTACTTTGCTCTTGGCGGTTGGCTTACCGGAACAACTTTTGTAACATCATG 117524 Query 180152 GTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTG 180210 ||| || || || | || || || ||||| || ||| |||||| | || || || | Sbjct 117525 GTATACTCATGGGTTGGCAAGCTCTTACCTTGAGGGCTGC-AACTTTTTGACTGCTGCCG 117583 Query 180211 TCTCGACGCCTGCTGAC-GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 180269 | || || || ||| || ||| ||| |||||||||| | ||| ||||| || || || Sbjct 117584 TGTCAACCCCAGCTAACAGCT-TGGCTCATTCTCTTTTACTATGGTGGGGGCCGGAAGCT 117642 Query 180270 CAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 180329 || || |||| || ||||| ||||| || || || |||| ||| || ||| | || Sbjct 117643 CAAGGAGATTTTACTCGTTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTTGCAT 117702 Query 180330 GGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGT 180389 ||||| || | | | |||||||| ||||| ||||| |||||| |||| || | | Sbjct 117703 GGTGCTTTTGGCTTGATTGGATTCATGCTTCGCCAATTTGAATTGGCTCGCTCTGTCCAA 117762 Query 180390 ATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTT 180449 | || ||||| || || ||||| || ||||| ||||| | || ||||| || || Sbjct 117763 TTACGACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCAGTTTTTGTATCTGTGTTC 117822 Query 180450 CTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCA 180509 | || || || || ||||| || |||||||||||||||| |||||| || |||||| Sbjct 117823 TTAATTTATCCTCTTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGCAGCA 117882 Query 180510 ATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCAT 180569 ||||| | ||| | | ||| | || ||||| || |||||||| || ||||| |||||| Sbjct 117883 ATCTTCCGTTTCATTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTTCCAT 117942 Query 180570 ATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACT 180629 |||||||| || |||||| | |||| | || | || | ||||| ||||||| |||| Sbjct 117943 ATGATGGGTGTGGCTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGCAACT 118002 Query 180630 GTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCA 180689 ||||| ||||| ||| |||||||||||| || ||||| || || ||| | | Sbjct 118003 GTGGAAAACACTTTGTTTGAAGATGGAGATGGTGCGAACACTTTCCGTGCCTTTAACCCT 118062 Query 180690 ACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 180749 || || || ||||| || || ||||| ||||||||||| |||||||| |||||||| Sbjct 118063 ACACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTT 118122 Query 180750 GGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 180809 |||||||| ||||| ||||| || ||||||||||| || ||| | ||||| ||||| | | Sbjct 118123 GGTATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTTCCTGTAACG 118182 Query 180810 GGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGAT 180869 || || |||| | | ||||| | | |||||||||||||| ||| | || || ||| Sbjct 118183 GGGCTTTGGATGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGAGCATATGAT 118242 Query 180870 TTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAG 180929 || || ||||||||| |||| |||||||||||||| || || || || ||||| || Sbjct 118243 TTTGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTTTACACAAAA 118302 Query 180930 AACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAA 180989 ||||| || || ||||| || | || || ||| |||| || ||||| || || ||| Sbjct 118303 AACATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAGCCTCATGAA 118362 Query 180990 AACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 || | | |||||||| || || |||||| | || ||||| Sbjct 118363 AATCTTGTATTCCCTGAGGAGGTCCTACCACGTGGAAACGC 118403 Score = 508 bits (562), Expect = 7e-139 Identities = 512/661 (77%), Gaps = 6/661 (1%) Strand=Plus/Plus Query 179187 CTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGT 179246 ||| ||||| ||||||||||| ||| | |||| | || |||||||| ||||| ||| Sbjct 72436 CTACATGGGCCGTGAGTGGGAGCTTAGCTTCCGTTTGGGCATGCGTCCTTGGATTGCTGT 72495 Query 179247 TGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCA 179306 || |||||||| || || || ||||| | ||||| ||| | |||| ||| | ||||| Sbjct 72496 AGCTTACTCTGCTCCGGTTGCAGCTGCTACCGCAGTGTTCTTGATCTACCCTATTGGTCA 72555 Query 179307 AGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 179366 ||| |||||||||| |||||||||||| || || || ||||| |||| ||| |||| Sbjct 72556 AGGCAGCTTCTCTGATGGTATGCCTCTTGGCATTTCCGGCACTTTCAACTTTATGATTGT 72615 Query 179367 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGT 179426 |||||||| || |||||||| ||||||||||| ||||| ||||| ||||| ||||| || Sbjct 72616 GTTCCAAGCTGAGCACAACATTCTTATGCACCCTTTCCACATGCTTGGTGTGGCTGGCGT 72675 Query 179427 ATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTT-GTTC 179485 || || || ||||| || ||||||||| || | ||||||||| |||| | | Sbjct 72676 GTTTGGCGGCTCTCTGTTTAGTGCTATGCATGGTTCCTTGGTTACTTCC-AGCTTAATCC 72734 Query 179486 GTGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGA 179545 |||| || ||||| | ||||| ||| |||||| ||||| || ||||||| || | Sbjct 72735 GTGAGACTACTGAAAACGAGTCTGCTAACGCTGGTTACAAGTTTGGTCAAGAAGGTGAAA 72794 Query 179546 CCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCT 179605 | || |||||||| || || || || ||||| ||||| | || |||||||| || || Sbjct 72795 CTTACAACATCGTGGCTGCTCACGGTTACTTTGGTCGCCTAATTTTCCAATACGCTAGCT 72854 Query 179606 TTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGT 179665 | |||||||| || ||||||||||||||||| ||||| ||||| || || |||||||||| Sbjct 72855 TCAACAACTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGCATCTGGT 72914 Query 179666 TCACTGCTCTTGGCGTGTCA--ACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCA 179723 | |||||||||| || ||| || |||||||||||||| |||||||||||||||||||| Sbjct 72915 TTACTGCTCTTG--GTATCAGCACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCA 72972 Query 179724 GTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGC 179783 || | ||||| | ||||| ||||| | ||||| ||||| ||| | | |||||||| Sbjct 72973 ATCTGTGGTTGACAGCCAAGGCCGTGTGATCAACACTTGGGCTGACATCATCAACCGTGC 73032 Query 179784 AGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGC 179843 | | ||||||||||| ||||| ||||||||||| ||||||||||| || ||||| || Sbjct 73033 AAACCTTGGTATGGAAGTGATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTAGC 73092 Query 179844 T 179844 | Sbjct 73093 T 73093 Score = 172 bits (190), Expect = 7e-38 Identities = 212/287 (74%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||||| ||||| || ||| | || || | || | |||||||| ||||| || Sbjct 44484 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 44425 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATC-TGTTTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| | | ||||||| | ||||| || |||| ||| | || || || Sbjct 44424 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 44366 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || || || || || || ||||| || || ||||||| | ||||||| ||||| Sbjct 44365 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 44306 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 |||||||||||||||| || |||| | || || |||||||| ||||||||||| || Sbjct 44305 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 44246 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTT 179146 |||||| || || || || ||||| ||||| || ||||| || |||| Sbjct 44245 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 44199 Score = 172 bits (190), Expect = 7e-38 Identities = 212/287 (74%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||||| ||||| || ||| | || || | || | |||||||| ||||| || Sbjct 134874 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 134933 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATC-TGTTTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| | | ||||||| | ||||| || |||| ||| | || || || Sbjct 134934 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 134992 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || || || || || || ||||| || || ||||||| | ||||||| ||||| Sbjct 134993 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 135052 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 |||||||||||||||| || |||| | || || |||||||| ||||||||||| || Sbjct 135053 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 135112 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTT 179146 |||||| || || || || ||||| ||||| || ||||| || |||| Sbjct 135113 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 135159 >seq1796 Length=400242 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 177392 CATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCATGCCGCGCTGGTGC 177451 |||||||||||||||||| || || || | || | ||||||||| | ||||| || Sbjct 28728 CATCCTCGACGCCGCTGAGGAGGCCGGAATCGACCTGCCCTACTCATGCAGGGCTGGCGC 28787 Query 177452 TTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGATCAAAGCGATCAATCGTT 177511 ||| ||||| || ||||| || ||||||| || | || || | || || || || Sbjct 28788 TTGCTCATCTTGCGCTGGCAAGGTTGAGAGCGGCACCGTTGACTTGGGGGACCAGTCTTT 28847 Query 177512 CTTGGATGACGATCA 177526 |||||||||||| || Sbjct 28848 CTTGGATGACGACCA 28862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610315760776320