Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1245 122 1e-22 seq992 105 8e-18 seq1085 104 3e-17 seq975 89.7 6e-13 >seq1245 Length=60194 Score = 122 bits (134), Expect = 1e-22 Identities = 172/237 (73%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 122641 GTCTTGAAGAGCTC-CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTC 122699 |||| | |||||| |||| | || || ||| || |||||||| ||| || || || Sbjct 44526 GTCTCGTAGAGCTGGCACG-CGAAGTCGGTGTGCAGCCCCTCATCGCGGCTGATGAGCTC 44584 Query 122700 ATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 122759 ||| | || || || || |||||||| ||||||||||||| ||| | || |||||||| Sbjct 44585 ATTGGCAAAACAAAGGCCGGGCATGAGTCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAA 44644 Query 122760 TGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 |||||| |||||| |||||||||||| || ||||| |||| || | || | || || Sbjct 44645 TGACCCCGAGAAGTGGATACCCTCCACGCATGCAAAGGCAACGAGCCTCTCTCCAAACGA 44704 Query 122820 GCGAGACTTTGCATCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 122876 | | | || || | ||| || ||||||| | ||||||| ||| | |||||| Sbjct 44705 CC--GTCCGCGC-TCGATCCACTTGGTTGCCCAGTCCGCCTTCCTCTGGACACATGG 44758 >seq992 Length=32546 Score = 105 bits (116), Expect = 8e-18 Identities = 269/406 (66%), Gaps = 5/406 (1%) Strand=Plus/Plus Query 111304 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTT 111363 ||| || ||||| || || || | || ||||||||| ||||| |||| || ||||| Sbjct 5459 GTTTGAGCTCTTTATGGTACCAAGATGCTTTTGGTTGCTCTTGCGGTTGACGGCGTCCTT 5518 Query 111364 GTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATC 111423 ||| |||| ||| |||||||| |||| || | |||| || || |||| | | Sbjct 5519 GTACAGCACGTAAGGCGTCCCTCCCTCCACTTGCGCGGTGAGCATGGCGCTCCAGAGCGC 5578 Query 111424 GGCGGCTGGTACAATGGCGTTGGCCCGTCCCTC---CGCCTCGTACTTTGTGTAGAGGGC 111480 || | || | | | || |||| |||||||||| | ||| || | Sbjct 5579 TTTCGCCCGAACCACCTTGCTCGCGAGTCCGGGTGTCGCCTCGTACCTCTCGTACAGCTC 5638 Query 111481 TTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 111539 ||||||||||| ||| || ||| | |||||| |||||||| || || |||| Sbjct 5639 CTCAAACTCCTC-CCCGTAGCAGTCCGGGAGACCCCTCGCCTTGTCCGGGTCAAAGAGAG 5697 Query 111540 ACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 |||| || | ||| || ||||| ||||| ||||| || | ||| || | | | Sbjct 5698 ACCACGTGCCGTCAGACTCGACGCGCTTGATGAACAGGTCCGGGACCCAGAGAGCCGTGA 5757 Query 111600 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 111659 | || || || |||| |||| |||| || ||| |||| ||| |||||||| | Sbjct 5758 ACAGGTCCCTGCACCTCACCTCCTCGTTGCCAGAGTTCTTGCGTAGCTCCAGGAACTCGA 5817 Query 111660 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 111705 || || |||||||| ||||| || |||| ||||| || ||||| Sbjct 5818 AGACGTCGGCGTGCCAGGGCTCGAGGTAGATCGCGATCGAACCCTT 5863 >seq1085 Length=40323 Score = 104 bits (114), Expect = 3e-17 Identities = 291/438 (66%), Gaps = 14/438 (3%) Strand=Plus/Minus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCT---AATGTTTTC 122426 |||| | | |||| | ||||||||||||| | ||| ||||| ||||| || || | Sbjct 3117 ATAGGCGCTGACCTTCCTCTCAAAGAAGTTTGCCTTGCCATCGAGGCTTTGAAGGT---C 3061 Query 122427 CATAAAGTCAAATGGATTCTTCGCGTTCC---AAATGGGTGGCACCCCAACTTGTTTGAG 122483 ||| || || || || || || || || || || | | | || |||| | | | Sbjct 3060 CATGAAATCGAAAGGGTTGG-CG-GTACCGTAAATTGCCTCGTATCCTAACT-GCTGGCA 3004 Query 122484 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 122543 ||| | || | ||| ||||||||||||| |||||| ||| ||| || ||||| | Sbjct 3003 GAGCCTGTCAGCAACAAACTCAATGTACTCTGACATCAGGCCAGCGTTGATCCCGATCAA 2944 Query 122544 GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 122603 | | || ||||| || |||||| | | |||||||| || | || | || || Sbjct 2943 TGAAGAGGGTAGTGCCTCACTGATGAAAGCCTGCTCAATCTTCACAACATCAGTGACAAT 2884 Query 122604 GGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTC-CACGGCAA 122662 | | | || | | | | | | | | |||| | |||||| |||| ||| Sbjct 2883 GTCCCTCACGGTCTGAGCTGGCAGCTTCTCCTGGAGGGTCTCGTAGAGCTGGCACG-CAA 2825 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| || || || || ||| || || ||||| | || || || || |||| Sbjct 2824 AGTCTGTGTGCAGCCCTTCGTCGCGGCTGATGAGCTCATTGGCAAAACAAAGGCCAGGCA 2765 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 |||| ||||||||||||| ||| | || || ||||| ||||| ||||| |||||||| Sbjct 2764 TGAGCCCCCGCTTCTTCAGCCAGAAGATGGCACAGAAGGACCCCAAGAAGTGGATACCCT 2705 Query 122783 CCACACACGCAAACGCAA 122800 |||| || ||||| |||| Sbjct 2704 CCACGCATGCAAAGGCAA 2687 >seq975 Length=31392 Score = 89.7 bits (98), Expect = 6e-13 Identities = 261/396 (66%), Gaps = 12/396 (3%) Strand=Plus/Minus Query 111304 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTT 111363 |||||| ||||| || || |||| ||||| ||||| ||| |||| || ||||| Sbjct 5451 GTTGGAGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGGACTTGCGGTTGACGGCGTCCTT 5392 Query 111364 GTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAG--CCTTCCAAACA 111421 | | ||||||||||| |||||||| | ||| |||| || ||||| || Sbjct 5391 GGCGGATATGTAGGGCGTTCCCGTCTCGAT----GATG-GAGACGAGGACCTTCTCC-CA 5338 Query 111422 TCGGCGGCTGGTACA-ATGGCGTT---GGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAG 111477 || |||| | ||| | || ||| || |||| ||||||||| | ||| || Sbjct 5337 GAGGTCCCTGGCGGAGATGACCTTCCTGGCTCGCCCCTGCGCCTCGTAAGAAGCGTATAG 5278 Query 111478 GGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAG 111537 || ||||||||||| || ||||| ||| || || |||| | |||||||| || Sbjct 5277 CGCCTCAAACTCCTCCCCGTAGACGTCGCTGAGCCCCGGAGCCTCGCTGGGACAGAACAG 5218 Query 111538 AGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGA 111597 ||| | || |||| |||||||| | ||| ||||| || | ||| |||| || Sbjct 5217 GCTCCACTTCCCGTCTTCTAGGACCCGCTTGAAGAAGAGGTCCGGCACCCAGAGGGCCGA 5158 Query 111598 AAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTC 111657 ||||| || | | || || || |||| ||| ||||| | ||| ||||| || Sbjct 5157 GAAGAGGTCGCGAGCCCTCCTGTCCTCTGCACCCACGTTCAGTCGGATCTCGAGGAAGTC 5098 Query 111658 CATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693 | || || |||||| | || || || |||| || Sbjct 5097 CTCGACGTCGGCGTGCTAAGGTTCCAGGAAGACCGC 5062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628017759374400