Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1245 129 7e-25 seq1085 129 7e-25 seq975 113 6e-20 seq992 104 3e-17 seq965 98.7 1e-15 seq493 91.5 2e-13 seq1324 89.7 6e-13 seq363 89.7 6e-13 seq1527 82.4 9e-11 >seq1245 Length=60194 Score = 129 bits (142), Expect = 7e-25 Identities = 261/380 (69%), Gaps = 7/380 (2%) Strand=Plus/Plus Query 129858 ACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGAGCGCGT 129917 ||||||||||||| |||||| | || || || || || | || || ||||| | Sbjct 44386 ACTCAATGTACTCCGACATCAGGGAAGCATTGATTCCAATAAGACTGCAGGGTAGCGCCT 44445 Query 129918 CCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTCCG 129977 | |||| || ||| |||||| | |||||| || || ||| | | ||||| | Sbjct 44446 CACAGATAAAAGCCTGCTCAATCTTCACAGCATCAGTGACAATGTCCCTCACGGTCTGAG 44505 Query 129978 -TGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACTCCTGGTGGAGACC 130035 || ||| | | | | | |||| | |||| | |||| | || || ||| || || Sbjct 44506 CTGGCAGCT-TCTCCTGGAGGGTCTCGTAGAGCTGGCACG-CGAAGTCGGTGTGCAGCCC 44563 Query 130036 CTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTT 130095 ||| || ||| |||||| ||||| | || || || || |||||||| ||||||||||| Sbjct 44564 CTCATCGCGGCTGATGAGCTCATTGGCAAAACAAAGGCCGGGCATGAGTCCCCGCTTCTT 44623 Query 130096 CAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGC 130155 || |||||| || || || ||||| || |||||| ||| |||||||| || || || || Sbjct 44624 CAGCCAGAAGATGGCGCAGAATGACCCCGAGAAGTGGATACCCTCCACGCATGCAAAGGC 44683 Query 130156 AAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGCGC 130215 || ||| | ||| |||| || | | | | || | |||||| | ||||| | ||| Sbjct 44684 AACGAGCCTCTCTCCAAACGACC--GTCCGCG-CTCGATCCACTTGGTTGCCCAGTCCGC 44740 Query 130216 CTTTTTCTCGATACACGGGA 130235 ||| ||| || ||| |||| Sbjct 44741 CTTCCTCTGGACACATGGGA 44760 >seq1085 Length=40323 Score = 129 bits (142), Expect = 7e-25 Identities = 299/441 (68%), Gaps = 10/441 (2%) Strand=Plus/Minus Query 129744 TCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTTCT 129803 |||| |||||||||| ||| || || | ||| | ||||| ||||| || ||||| Sbjct 3100 TCTCAAAGAAGTTTGCCTTGCCATCGAGGCTTTGAAGGTCCATGAAATCGAAAGGGTTGG 3041 Query 129804 TTGAGTTCC--AAATTGC-TGGCACTCCAATCTGTTTGAGGAGACGATCCGAGACGTACT 129860 | | || ||||||| | | | ||| | ||| | | ||| | || | || ||| Sbjct 3040 CGG--TACCGTAAATTGCCTCGTA-TCCTAACTGCTGGCAGAGCCTGTCAGCAACAAACT 2984 Query 129861 CAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCA 129920 |||||||||| |||||| | | ||| || ||||| | | | || || || || Sbjct 2983 CAATGTACTCTGACATCAGGCCAGCGTTGATCCCGATCAATGAAGAGGGTAGTGCCTCAC 2924 Query 129921 AGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTCCG-TG 129979 |||||| ||| |||||| | |||| | || || ||| | | ||||| | || Sbjct 2923 TGATGAAAGCCTGCTCAATCTTCACAACATCAGTGACAATGTCCCTCACGGTCTGAGCTG 2864 Query 129980 CCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACTCCTGGTGGAGACCCTC 130038 ||| | | | | | |||| | |||| | |||| |||| || ||| || || || Sbjct 2863 GCAGCT-TCTCCTGGAGGGTCTCGTAGAGCTGGCACG-CAAAGTCTGTGTGCAGCCCTTC 2806 Query 130039 GTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAA 130098 ||| ||| |||||| ||||| | || || || || |||||||| ||||||||||||| Sbjct 2805 GTCGCGGCTGATGAGCTCATTGGCAAAACAAAGGCCAGGCATGAGCCCCCGCTTCTTCAG 2746 Query 130099 CCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAA 130158 |||||| || ||||| || || || ||||| ||| |||||||| || || || |||| Sbjct 2745 CCAGAAGATGGCACAGAAGGACCCCAAGAAGTGGATACCCTCCACGCATGCAAAGGCAAC 2686 Query 130159 GAGACGCTCAGCAAAGGAGCG 130179 ||| | ||| |||| || || Sbjct 2685 GAGCCTCTCTCCAAACGACCG 2665 >seq975 Length=31392 Score = 113 bits (124), Expect = 6e-20 Identities = 269/402 (67%), Gaps = 10/402 (2%) Strand=Plus/Minus Query 118771 TGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 118830 |||||| ||| || ||||| |||||||||| |||||| || || ||||| ||| | Sbjct 5458 TGCACAGGTTGGAGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGGACTTGCGGTTGACGG 5399 Query 118831 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 118890 | |||||| ||||| ||||| |||||||| | ||| ||| | || || Sbjct 5398 CGTCCTTGGCGGATATGTAGGGCGTTCCCGTCTCGATGATGGAGACGAGGACCTTCTCCC 5339 Query 118891 AGACATCGGCAGCTGGCACAG-TGGCGTT---GGCTCGCCCCTCTTCCTCGTACTTTGTG 118946 ||| || ||||| || || | || ||||||||||| ||||||| | | Sbjct 5338 AGAGGTCC----CTGGCGGAGATGACCTTCCTGGCTCGCCCCTGCGCCTCGTAAGAAGCG 5283 Query 118947 TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CA 119005 || || || |||||||| || || | | || |||||| || |||| ||||| || Sbjct 5282 TATAGCGCCTCAAACTCCTCCCCGTAGACGTCGCTGAGCCCCGGAGCCTCG-CTGGGACA 5224 Query 119006 GAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 119065 ||| || ||| | || | || |||||||| | ||||||||| || | |||||| Sbjct 5223 GAACAGGCTCCACTTCCCGTCTTCTAGGACCCGCTTGAAGAAGAGGTCCGGCACCCAGAG 5164 Query 119066 CGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 119125 ||||||||||| || ||| | || || | ||| || || || | ||| | Sbjct 5163 GGCCGAGAAGAGGTCGCGAGCCCTCCTGTCCTCTGCACCCACGTTCAGTCGGATCTCGAG 5104 Query 119126 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 119167 |||||| || || |||||| | ||||||||| | ||||| Sbjct 5103 GAAGTCCTCGACGTCGGCGTGCTAAGGTTCCAGGAAGACCGC 5062 >seq992 Length=32546 Score = 104 bits (114), Expect = 3e-17 Identities = 425/662 (64%), Gaps = 15/662 (2%) Strand=Plus/Plus Query 117924 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983 ||||||||||| ||||| |||||||||||| ||| || || ||||| | ||||| Sbjct 4330 AAGAGGTTCATGGACTGGGACTGATCGATGAAGATTCCGCGGTCTGCCGCGAGGTCAATT 4389 Query 117984 ACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATA 118043 || || | ||| || | ||| || ||| | || || | ||| | ||| || ||||| Sbjct 4390 ACGACCCGCTGCTTTATCTGCCATACCGTCTTATACAGCTCCTTCAGATCGTCCGGGATC 4449 Query 118044 TCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTT 118100 || ||| || ||||| | |||| || |||||| | |||||||||| | Sbjct 4450 TCGGGGATGGCCTGAATGGAGC--CCCG-ATTCGCCATGATCTGGTCCTTCATATGATCA 4506 Query 118101 GACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCA 118160 ||| || || | | | ||| ||| ||| ||| || || || | || |||||||| Sbjct 4507 TTCCACAGGCCCAGCCTGACGAGGTCCGCCATGAGGTGGTTGTTTGCCACCACAAACTCC 4566 Query 118161 CCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTA 118220 || ||||| || |||| || || | ||| | | | | ||| ||| ||| Sbjct 4567 CCTGCGAGAGTACGTCGCACGTACAGGTTGCTGCTCAACGCCTCTGCCGCCTCGACGTTC 4626 Query 118221 CCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGA 118280 || | || || | || || || |||||||| | | || | || || || | Sbjct 4627 CCAAGGAGGTGACCGGTAGACGCGGTGGGCATCACACACGTAAGCAAACTATTGCGCATG 4686 Query 118281 CCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCT---TTGTCTCC 118337 ||| | | | | ||| ||||| || || |||| |||||| | || || || | Sbjct 4687 CCCGACTTCTTCACGCGCTCCTTAAGGCCGGCCCAATCGTAGCCCATCTCGGCTGGCTTC 4746 Query 118338 CCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCA 118397 || ||||| |||||||| || | || | ||||| || ||||||| || |||||| Sbjct 4747 TTCTCCCACAGGTCAAACTGCAGCAGCCCCTTGGACGAGGGAGATCCCTGGAAGGTCTCA 4806 Query 118398 TATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTT 118457 || | ||||| |||| || | ||| | |||||||| || |||| || || | Sbjct 4807 TACGCGCCCTTCTCCTCAGCGAGCTCGACGGACGCCTCGACCGCCGCGTAGTAGATGCTC 4866 Query 118458 TCAAAAATGCGAGC-ATTCATTGCCTTGGCCTCGTCGGAAT--CAAACGCGAGTCGGCAC 118514 | || ||| | || || | ||| ||||| | ||| | || | || ||| | Sbjct 4867 TGGAAGATG-GCGCTGTTGAGCGCCCTGGCCCC--CGGGCTGCTGAAGGGCAGCCGGAGC 4923 Query 118515 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 118574 | || || || ||||| || || || || |||||||| | || || || | |||||| Sbjct 4924 ATCATGAAGACGTCCGCCAGCCCCTGCACGCCGAGGCCCAGGGGACGGTGGCGCATATTC 4983 Query 118575 GA 118576 || Sbjct 4984 GA 4985 >seq965 Length=28847 Score = 98.7 bits (108), Expect = 1e-15 Identities = 269/409 (66%), Gaps = 5/409 (1%) Strand=Plus/Plus Query 118778 GTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 118837 |||||| |||||||| ||||||| || || || |||||| |||| || ||||| Sbjct 1284 GTTTGAGCTCTTAATAGTGCCCAGGTGGCGCTGGTTGGACTTTCTGTTGACGGCGTCCTT 1343 Query 118838 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATC 118897 | | || | ||| || ||||| |||| || | | | || || || |||||||| | Sbjct 1344 GAAGAGGACGTACGGGGTCCCTCCCTCCACCTGCGCCGTCAGCATGGCGCTCCAGACAGC 1403 Query 118898 GGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTC---TTCCTCGTACTTTGTGTAGAGGGC 118954 || |||| | |||| ||||| | |||| || | ||| | Sbjct 1404 CTTGGCCCGCACCACCCTGCTGGCGAGCCCCGGGGTTGCCTCATAAGAGGCGTACAACTT 1463 Query 118955 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014 |||||||| | | || | || | ||| || || ||||| | ||| ||| || || Sbjct 1464 TTCAAACTGTGCTCCATAGCAGTCGGGGAGGCCGGGGGCCTTGTTGGGGTCGAACAGGGA 1523 Query 119015 CCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 119074 ||| || ||||||| |||||||| ||||| || || || | |||||| || | ||| Sbjct 1524 CCACATGCCGTCCTCCTCCACCCGCTTGATGAACAGATCCGGCACCCAGAGGGCGGTGAA 1583 Query 119075 GAGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 119133 ||| || | || | | || || | || ||| | | |||| ||| | ||||| | Sbjct 1584 GAGGTCTCTGCACCTCATCTCCTCTTTGCCGCTGTTCTTG-CGCAGCTCGAGGAAGTCGA 1642 Query 119134 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 119182 |||||| ||||||||||| |||||||| | | ||| || ||||| || Sbjct 1643 AGATATCAGCGTGCCACGGCTCCAGGTAGATTGTGATGGAGCCCTTCCG 1691 >seq493 Length=7941 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 117919 CCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATAT 117978 ||||||| | |||| || ||||| |||||||||||| || ||||| || || | || Sbjct 267 CCATGAACAAATTCAAGCTCTGGGACTGATCGATGAAGATCCCGCGATCGGCTGCGAAAT 208 Query 117979 CAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTG 118038 | ||||| ||||| |||||| |||||||| || | ||| || | ||| | || || | Sbjct 207 CGATCACGACCTTCTGCTTGATCTCCCACACCGTGCGGTACAGCTCCTTGAGGTCGTCCG 148 Query 118039 GGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCA 118092 |||| || |||| |||||||| | |||| ||| |||||| | ||||||| Sbjct 147 GGATCTCAGGGATAGCCTGGATGGA--CCCCCG-GTTGGCCATGATCTGCTCCTTCA 94 >seq1324 Length=68835 Score = 89.7 bits (98), Expect = 6e-13 Identities = 188/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 119191 CCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGG 119250 |||| | ||||| || |||||| | || || || | |||||||| | ||| |||| || Sbjct 21559 CCTGATCAACATATCTGGCAGTGTCATTGAAGACTCTGAGCATTGGGACGATGCCATTGG 21618 Query 119251 ATTGGCCATTTGTCCCCCGAATACGAGACTTAT--TGGCTCTGACATCGTGGATGTGCAT 119308 || ||| ||||| || || || || || | |||| | || | ||||||| || Sbjct 21619 ATGTGCCGTTTGTGCCGCGGATGT-AG-CTGCTGGTGGCGCGGATGTTGTGGATGGACAG 21676 Query 119309 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 119368 || || || ||||| | ||| ||| ||| |||||| |||| || ||||||| || Sbjct 21677 TCCGATGCCGCCTGCGCTCTTGCTGATGCCCGCACACTCCTTGAGGGTGTCGTAGATGCC 21736 Query 119369 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGT 119428 ||||| ||| |||| | | ||||||||||| | || |||| || || Sbjct 21737 CTCGATGCTGTCCTCCTTCATGCACACCAGGAAGCAGCTGCTGAGCTGCGGCCGAGGGGT 21796 Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAAC 119465 || ||||||||||| || || | |||||| || || Sbjct 21797 GCCGGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGTAC 21833 >seq363 Length=6568 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 117923 GAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAAT 117982 |||||| |||| || ||||| |||||||||||| || ||||| || || | ||| || Sbjct 325 GAAGAGATTCAAGCTCTGGGACTGATCGATGAAGATCCCGCGATCGGCTGCGAAATCGAT 266 Query 117983 CACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGAT 118042 ||| ||||| |||||| ||||| |||||| |||| || | ||| | || || ||||| Sbjct 265 CACGACCTTCTGCTTGATCTCCCAGACAGTCTTGTACAGCTCCTTGAGGTCGTCCGGGAT 206 Query 118043 ATCCACGATATTTTGGATGGATCC 118066 || |||| ||||| || || Sbjct 205 CTCAGGGATAGCCTGGATCGACCC 182 >seq1527 Length=111933 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| | ||||||||| || || ||||| || || ||||| || || Sbjct 31653 GTGGAGGCCCTCGTCCCTGGAGATGAGCTCGTTGGAGAATGTGAGCCCAGGCATAAGGCC 31712 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAA 130116 ||||||||||| |||||| || || ||||| Sbjct 31713 CCGCTTCTTCAGCCAGAAGATGGCGCAAAA 31742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618421176981840