Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq992 120 4e-22 seq596 93.3 5e-14 seq1718 84.2 3e-11 seq1424 84.2 3e-11 >seq992 Length=32546 Score = 120 bits (132), Expect = 4e-22 Identities = 275/411 (67%), Gaps = 5/411 (1%) Strand=Plus/Minus Query 104600 AAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAG 104659 ||||| || ||||| |||| || ||||| |||||||| || || | |||||||| ||| Sbjct 5863 AAGGGTTCGATCGCGATCTACCTCGAGCCCTGGCACGCCGACGTCTTCGAGTTCCTGGAG 5804 Query 104660 TTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGG 104719 | || ||| || ||||||||| | ||||| | || || ||| | ||||||||| Sbjct 5803 CTACGCAAGAACTCTGGCAACGAGGAGGTGAGGTGCAGGGACCTGTTCACGGCTCTCTGG 5744 Query 104720 ATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCA 104779 | || || || ||||| ||| | || ||| |||| |||||||||||| || Sbjct 5743 GTCCCGGACCTGTTCATCAAGCGCGTCGAGTCTGACGGCACGTGGTCTCTCTTTGACCCG 5684 Query 104780 GACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAA 104838 |||||||| |||||| | || ||| ||| ||||||||||| | || ||| | Sbjct 5683 GACAAGGCGAGGGGTCTCCCGGACTGCTACGGG-GAGGAGTTTGAGGAGCTGTACGAGAG 5625 Query 104839 GTACGAGG---AAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGC 104895 |||||||| | || | |||| | ||| | || | | |||| || Sbjct 5624 GTACGAGGCGACACCCGGACTCGCGAGCAAGGTGGTTCGGGCGAAAGCGCTCTGGAGCGC 5565 Query 104896 TATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAA 104955 || |||| | ||| ||| || || || ||| |||| ||||| |||||| || Sbjct 5564 CATGCTCACCGCGCAAGTGGAGGGAGGGACGCCTTACGTGCTGTACAAGGACGCCGTCAA 5505 Query 104956 CCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTG 105006 || ||||| || |||||| || | ||| || ||||| || || ||||| Sbjct 5504 CCGCAAGAGCAACCAAAAGCATCTTGGTACCATAAAGAGCTCAAACCTCTG 5454 >seq596 Length=10182 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/208 (71%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT-TCCTTTGCTGAGCG 94808 ||||| ||||| ||||| ||| |||| ||| | ||| || || ||||||||| | Sbjct 1492 AAGAAGGCGGACTGGGCCGTGAGGTGG----ATAGAGAGTTCCGACTCGTTTGCTGAGAG 1437 Query 94809 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 94868 || |||| |||||||| |||||||| ||| | || | ||||||||||| || || Sbjct 1436 GCTGGTCGCGTTTGCGTGCGTTGAGGGCATCCTTTTTAGCAGCTCCTTCTGCGCCATCTA 1377 Query 94869 TTGGCTCAAGAAGCGAG-GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTC 94927 |||||| ||| ||| || || |||| || || || ||||||||||| ||| | Sbjct 1376 TTGGCTGAAG-AGCAAGAACCTGCTGCCGGGGCTGACATTTTCCAACGAGCTCATCGCCA 1318 Query 94928 GTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| |||||| || ||||| Sbjct 1317 AGGACGAGGCGCTCCACACGGACTTTGC 1290 >seq1718 Length=209761 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GG 9672 ||||||||||||||||||| ||| ||||| || || |||||||| ||||| || || | Sbjct 30763 AAACCATCCATCTCTGTCAGAAGCTGGTTGATGGTCTGTTCCCGCTCATCGTTGCCTCCG 30704 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | ||| || | || ||| | || || || ||||| || ||||| ||||||||||| Sbjct 30703 CCCA-TACCGGCCCCACGCTGCCTGCCGACAGCGTCAATTTCGTCAATAAAGACGATGCA 30645 Query 9733 TGG 9735 || Sbjct 30644 GGG 30642 >seq1424 Length=89163 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || || ||||| || ||||| ||||||||||| | ||||||||| || | |||||| Sbjct 46884 GCGTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGCCAGCTTCTGCGCCATCTTCTGGCTC 46943 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 |||||| | || | | || || ||| ||||| |||||||| ||||| || |||||| Sbjct 46944 AAGAAGAGGGGCATGCTCCCGGGGCTCACGTTCTCTAACGAGCTGATCTCGCGGGACGAG 47003 Query 94936 GGACTCCAC 94944 | || ||| Sbjct 47004 GCGCTACAC 47012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583247574561360