Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1541 131 5e-25 seq1075 116 1e-20 seq1465 98.7 3e-15 seq1383 95.1 4e-14 seq871 91.5 4e-13 seq1776 89.7 2e-12 seq794 89.7 2e-12 >seq1541 Length=115782 Score = 131 bits (144), Expect = 5e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 140523 CTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCA 140582 || || || || || || || ||||| || ||||| || ||||||| | || |||||| Sbjct 42835 CTGAGCACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCA 42894 Query 140583 TCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTA 140642 || || | || || || ||||| || || | ||||| ||||| || || || || ||| Sbjct 42895 TCCTCCAACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTA 42954 Query 140643 TCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT-TCAACTTCAAGTGTAAC 140701 |||||||| ||||| || ||||||||||| | || | || | ||||| || || |||| Sbjct 42955 TCCTGAATCTTAGCCTTCACATTATCAATGGTGTC-GCTGCTCTCAACCTCTAGCGTAAT 43013 Query 140702 TGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || || || ||||| |||||||| Sbjct 43014 GGTCTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 43049 >seq1075 Length=42261 Score = 116 bits (128), Expect = 1e-20 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 || || || | ||||| || | ||| |||||||||||||| || || || ||||||| Sbjct 14880 CCTCCTCGGAGTCTTAATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 14821 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || || || || || || || || ||||| || || ||||| || || ||| Sbjct 14820 AGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 14761 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || ||||| ||| | ||||| | || |||| || ||| Sbjct 14760 ATCCCCTCCTTGTCCTGGATCTTGGCTTTGACAGTGTCAATGGTGTCTGATGACTCCACT 14701 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATTA 140739 || || || | || ||| | || | ||| || ||||| ||||||| Sbjct 14700 TCGAGGGTTATGGTTTTTGCTGTCAATGTACGAACGAAAATTTGCATTA 14652 >seq1465 Length=98723 Score = 98.7 bits (108), Expect = 3e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || || || || ||||| || || || || || |||| | ||| || ||||| Sbjct 61192 AGAACCAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGTGTACGGCCATCC 61251 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || |||||||| ||||||||||| || || ||||| ||||| ||||| || ||||| ||| Sbjct 61252 TCGAGTTGTTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCC 61311 Query 140646 TG 140647 || Sbjct 61312 TG 61313 >seq1383 Length=79212 Score = 95.1 bits (104), Expect = 4e-14 Identities = 204/305 (67%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 || |||||||| || |||||||| || ||||| || || || ||| | || ||||| || Sbjct 53804 ATCTTTGATTTGGGGGGTGGTACATTCGATGTGTCCCTGCTGACAATCGAGGAGGGTATC 53863 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGT 349894 ||||| || || | || | || ||||||||||| || ||||| ||||| || || | Sbjct 53864 TTTGAGGTCAAGTCCACGTCAGGAGATACACATCTGGGAGGAGAGGATTTCGACAACAGG 53923 Query 349895 CTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAAT 349954 | || || |||||| | || || ||| | | || | |||||| | | ||| Sbjct 53924 ATGGTCAACCACTTTGTTCAGGAGTTCAAGAGGAAGTACAAGAAGGATATTAGTGGTAAC 53983 Query 349955 CCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCT 350014 | || || || | | || || || | || || || |||||||| || | || ||| Sbjct 53984 GCCAGGGCTCTGAGGAGGCTGAGGACGTCATGCGAGCGCGCTAAGCGGACCCTGTCTTCT 54043 Query 350015 ACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCT 350074 || | || ||| | || ||||| || || || || || | || |||| ||| | Sbjct 54044 ACAGCTCAGACCACCATCGAAATCGACTCACTGTTCGAGGGGATTGACTTCTACTCAACC 54103 Query 350075 ATTAC 350079 ||||| Sbjct 54104 ATTAC 54108 >seq871 Length=23497 Score = 91.5 bits (100), Expect = 4e-13 Identities = 136/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 || ||| || || | ||| ||||| | || |||||||||||||| || || || || || Sbjct 11275 CACACCTCCTCGGAGTCTCAGAACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTC 11334 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | | || || || || || || || || || |||| || || || || || || Sbjct 11335 AGCCAGCGAACGGCCGTCCTCCAGCTGCTTGCCCGC-TAGATGAGGCGCTGTTGTTCTGG 11393 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || ||||| ||||| ||||| | || || | || Sbjct 11394 GGGAATCCCCTCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATGGTGTCTGACGACTC 11453 Query 140687 AACTTCAAGTGT 140698 |||||| || || Sbjct 11454 AACTTCCAGGGT 11465 >seq1776 Length=305386 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| || || | | ||||| |||||||| |||||||| || || || || | Sbjct 215650 TTTGCATACCGCCCCGCAGCCGCAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGT 215591 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || ||||| || || || || || |||||||| || || || ||||| | Sbjct 215590 AGTCCGCCAGGGTGCGCCCGTCCTCGAGCTGCTTCCCAGCAAAAATCAGCCGCTGCTGGT 215531 Query 140623 CAGGAGGAATTCCT 140636 |||||||||| ||| Sbjct 215530 CAGGAGGAATACCT 215517 Score = 87.8 bits (96), Expect = 5e-12 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||||| || ||||| || || || | | || || ||||| || | Sbjct 216444 CAAG-TGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGGCCATCCTCCA 216386 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 || || || || ||||| | | ||||| || || ||||| || || |||||||||| Sbjct 216385 ACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAA 216326 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGTCTTT 140708 | || || || ||||| || || | || | ||| || || ||||| || | ||||| Sbjct 216325 TCTTGGCCTTGACATTGTCGATGGTGTC-GCTGGACTCGACCTCAAGCGTGATGGTCTTG 216267 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || ||||| || || || ||||| Sbjct 216266 CCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 >seq794 Length=17272 Score = 89.7 bits (98), Expect = 2e-12 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 177860 AGCTGGAGTGTAGCATTGTCAATGCGTGAGAAATTGCAGGTTCCTGATGGCTGGTGCTCC 177919 || ||||| | ||| ||||| || | ||||||||| || || || || |||||||| Sbjct 8800 AGATGGAGCGCAGCGTTGTCGATCCTGCTGAAATTGCAAGTACCCGAAGGTTGGTGCTCT 8741 Query 177920 TCGGGCCGAAGGGCGAAGGAGTAGAGATTGATACCAGTGTCAGGGGATCG-GGTGTGGTG 177978 || || ||||||||| ||||| | ||| || | ||||||| ||||||||| Sbjct 8740 TCTGGTTTGAGGGCGAAGCTGTAGACGTAGATGA-AGCGGTTGGGGATCCTGGTGTGGTG 8682 Query 177979 CTGGTAGGGCTGAACAAGGTCGAAGTATGTACCCTCACGCTCTGAGAAGCGGTCCTGACC 178038 |||||||||||| || || |||||| | | | ||||| ||||||||| || || Sbjct 8681 CTGGTAGGGCTGCACCAGCCGGAAGTAGGGCGCGGCCCGCTCCTGGAAGCGGTCGTGGCC 8622 Query 178039 ATTAAGCTGAAGTTTGGCTGT 178059 || ||| | | ||||| || Sbjct 8621 GTTGAGCAGGATCTTGGCGGT 8601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515219182646642