Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1776 197 3e-45 seq1541 194 4e-44 seq1075 134 3e-26 seq871 129 1e-24 seq1468 93.3 1e-13 seq1669 87.8 4e-12 seq1800 86.0 1e-11 >seq1776 Length=305386 Score = 197 bits (218), Expect = 3e-45 Identities = 177/221 (80%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || || || | ||||||||||||||| || ||||| || ||||||||||||||||| Sbjct 214082 AGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTG 214023 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| |||||||||||||| ||||||||||| | || |||||||| |||| ||| || Sbjct 214022 CCATCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCCTCT 213963 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGA 211073 |||||||| ||||| |||||||| ||||||||||| ||| || ||||| || Sbjct 213962 TTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTC---GCTCGACTCCACCTCAAGG 213906 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 213905 GTGATAGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 213865 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || || || | ||| || || ||||| || || ||||| || || || || || | Sbjct 216455 AGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGG 216396 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| |||| |||||| || |||||||| | | || ||||| || |||| || ||| Sbjct 216395 CCATCCTCCAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCC 216336 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || ||||| ||||| || || || ||||||||||| | || ||||| || ||| Sbjct 216335 TTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGCGTG 216276 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || || || | ||||| Sbjct 216275 ATGGTCTTGCCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||| ||||| || || || ||||||||||| ||| |||||||| Sbjct 214702 CCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCAACCTCC 214643 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || ||||| ||||| ||||| | |||||| Sbjct 214642 AGAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 214599 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||||||||| || ||||||||||| || || || ||||| | || || Sbjct 216221 AGCACCAGGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGCCAGGGTGCGACCGTCC 216162 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || ||||||||||| ||||| || | || || ||||| ||||| Sbjct 216161 TCGAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGAGG 216118 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/108 (78%), Gaps = 6/108 (6%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACC 211067 |||||||||||||| || || || || || ||||||||||| |||| || ||| Sbjct 215179 CCTTCCTTGTCCTGAATTTTCGCCTTGACATTGTCGATGGTGTC---GCTTGACTCCACC 215123 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| ||||| || ||||||||||| ||||| | ||||||| Sbjct 215122 TCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTCACAAAAATCTGCATT 215075 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| || ||||| || |||||||| || ||||| ||||| | || || Sbjct 215627 AGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGCCCGTCC 215568 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || |||||||| || || || || || || || ||||||||||||| Sbjct 215567 TCGAGCTGCTTCCCAGCAAAAATCAGCCGCTGCTGGTCAGGAGGAA 215522 >seq1541 Length=115782 Score = 194 bits (214), Expect = 4e-44 Identities = 178/224 (79%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || || || || | ||||||||||||||| || ||||||||||| || || ||||| Sbjct 44997 CGCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCCAGGGTT 45056 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || ||||| |||||||||||||| |||||||| || | || ||||||||||| | |||| Sbjct 45057 CTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCT 45116 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCG 211070 ||||||||||| ||||| || ||||| ||||||||||| |||| || ||||| Sbjct 45117 TCCTTGTCCTGAATCTTGGCCTTTACGTTGTCGATGGTGTC---GCTTGACTCCACCTCC 45173 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 45174 AGGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCAT 45217 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || || || | ||| || || ||||| || |||||||| || || || ||||| | Sbjct 43060 AGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGC 43119 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| |||| ||||||||| ||||| ||||| | || ||||| || || | || ||| Sbjct 43120 CCATCCTCCAACTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCC 43179 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| ||||| || || || ||||||||||| | |||||||| || ||| Sbjct 43180 TTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCAACCTCAAGCGTG 43239 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || || || | |||||| Sbjct 43240 ATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 43277 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/116 (79%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | ||| || ||||| ||||| ||||| ||||||||||| || || || ||||| Sbjct 43285 CGCAGCCGTAGCACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTA 43344 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTG-TTGGTCAGGAGGAA 211008 | ||||| || ||||||||||| || ||||| || || || |||||| ||||||| Sbjct 43345 CGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTTGGTCCGGAGGAA 43400 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||| |||||| ||||| || ||||| ||||| ||| || ||||| Sbjct 44381 CCTTCCTTGTCCTGAATCTTTGCCTTCACATTGTCGATCGTGTCGCTGCTCTCCACCTCC 44440 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || | |||||| ||||| | |||||| Sbjct 44441 AGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAAATCTGCAT 44484 >seq1075 Length=42261 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || ||||||| || | || ||||| |||||||| |||||||| ||||| || || || Sbjct 14874 CGGAGTCTTAATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAGCGTG 14815 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || ||||||||||| || |||||||| ||||| || ||||| || |||| || Sbjct 14814 CGGCCGTCCTCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATCCCC 14755 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| ||| || | || |||||||| || || || ||||| Sbjct 14754 TCCTTGTCCTGGATCTTGGCTTTGACAGTGTCAATGGTGTCTGATGACTCCACTTCGAGG 14695 Query 211074 GTGATCGTCTTT 211085 || || || ||| Sbjct 14694 GTTATGGTTTTT 14683 >seq871 Length=23497 Score = 129 bits (142), Expect = 1e-24 Identities = 144/191 (75%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || ||||| || || | ||| ||||| |||||||| |||||||| || || || || | Sbjct 11285 CGGAGTCTCAGAACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGCCAGCGAA 11344 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||||||||||||| || | ||| ||||| ||||| || || |||| || Sbjct 11345 CGGCCGTCCTCCAGCTGCTTGCCCGCTA-GATGAGGCGCTGTTGTTCTGGGGGAATCCCC 11403 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| ||| || || || |||||||| || ||||| || || Sbjct 11404 TCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATGGTGTCTGACGACTCAACTTCCAGG 11463 Query 211074 GTGATCGTCTT 211084 ||||| || || Sbjct 11464 GTGATGGTTTT 11474 >seq1468 Length=100361 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| ||||| || ||||||||||| ||| || |||||| Sbjct 72288 CCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCGCTGCTCTCCACCTCG 72229 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| ||||| | |||||| Sbjct 72228 AGGGTGATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 72185 >seq1669 Length=175719 Score = 87.8 bits (96), Expect = 4e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| ||||| || | || ||||| ||||| | || ||||||||||| ||||| Sbjct 48928 CCTGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCC 48987 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGA 211092 ||||| || |||||||| || || || |||||||| ||||| ||||| ||||||| Sbjct 48988 TTCACATTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTGA 49045 >seq1800 Length=440711 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| || || || ||| ||| | ||| ||||| || ||||| ||||| | ||||| || Sbjct 106663 GACCAGATGCAGGGTGCTCTCGTCTTGAATGTTGTAGTCCGCCAGGGTGCGCCCATCCTC 106722 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 ||||||||| || || ||||| || || ||||| || ||||||| || ||| | ||||| Sbjct 106723 CAGCTGCTTTCCCGCAAAGATGAGCCGCTGTTGATCCGGAGGAATGCCCTCCATATCCTG 106782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159125059134110