Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1075 109 4e-19 seq1776 91.5 1e-13 seq1541 89.7 3e-13 seq871 89.7 3e-13 >seq1075 Length=42261 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||| || | || | |||||| || || |||||||| || || | Sbjct 14653 AATGCAAATTTTCGTTCGTACATTGACAGCAAAAACCATAACCCTCGAAGTGGAGTCATC 14712 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | ||| || || ||||| || || | || ||||| || Sbjct 14713 AGACACCATTGACACTGTCAAAGCCAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCA 14772 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || ||||| || || ||||| |||| ||||| | | |||||||| Sbjct 14773 GCAGCGCCTCATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCTGATTACAA 14832 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || |||||||| || | ||||| || ||||| | |||||||| Sbjct 14833 CATCCAGAAAGAGTCTACTCTCCATTTGGTATTAAGACTCCGAGGAGG 14880 >seq1776 Length=305386 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| || || || ||||| || || || || |||| Sbjct 216238 ATGCAAATCTTCGTCAAAACCCTCACTGGCAAGACCATCACGCTTGAGGTCGAGTCCAGC 216297 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || ||| || || || || | || ||||| || Sbjct 216298 GACACCATCGACAATGTCAAGGC-CAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCA 216356 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||| || || |||| || | |||||| | | ||| ||||| Sbjct 216357 GCAGAGGTTGATCTTCGCCGGGAAGCAGTTGGAGGATGGCCGCACTCTGGCCGACTACAA 216416 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAG 23845 ||| || || ||||| || | || || || | ||| || | || || |||| || Sbjct 216417 CATTCAGAAGGAGTCGACCCTGCACTTGGTGCTCAGGCTGAGGGGTGG-TCAGTAG 216471 >seq1541 Length=115782 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || ||||| || || ||||| |||| Sbjct 43277 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACGCTTGAGGTTGAGTCCAGC 43218 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || ||| ||||| || || | || ||||| || Sbjct 43217 GACACCATCGACAATGTCAAGGC-CAAGATTCAGGACAAGGAGGGCATCCCACCAGACCA 43159 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || |||||||| || |||| || | || || | | || ||||| Sbjct 43158 GCAGAGGCTTATTTTCGCCGGCAAGCAGTTGGAGGATGGGCGTACCCTGGCTGACTACAA 43099 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 43098 CATCCAGAAGGAGTCGAC 43081 >seq871 Length=23497 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 ||||||||||| ||||| || | || | ||||| ||||| || |||||||| || Sbjct 11506 AAATGCAGATTCTCGTTCGTACGTTGACATGTAAAACCATCACCCTGGAAGTTGAGTCGT 11447 Query 23669 CGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| ||| | ||| | || || ||||| || || | || ||||| Sbjct 11446 CAGACACCATTGAGAATGTCAAAGC-CAAGATCCAGGACAAGGAGGGGATTCCCCCAGAA 11388 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||||| | || | || ||||| || ||||| |||| || | | | || ||| Sbjct 11387 CAACAGCGCCTCAT-CTAGCGGGCAAGCAGCTGGAGGACGGCCGTTCGCTGGCTGACTAC 11329 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || |||||||| || | || || ||| | || | |||||||| Sbjct 11328 AACATCCAGAAAGAGTCTACTCTCCACTTGGTTCTGAGACTCCGAGGAGG 11279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338002127241512