Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1776 132 1e-25 seq1075 125 2e-23 seq1541 120 7e-22 seq871 111 4e-19 seq1813 104 6e-17 seq1814 89.7 1e-12 >seq1776 Length=305386 Score = 132 bits (146), Expect = 1e-25 Identities = 147/196 (75%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 || || || || | ||| |||||||| || || |||| ||||||||| || | || || Sbjct 214082 AGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTG 214023 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || |||||||| |||||||||||||| | || ||||| || ||||| || || Sbjct 214022 CCATCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCCTCT 213963 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || ||||| |||||| ||||||||||| | ||||| || | ||| Sbjct 213962 TTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTG 213903 Query 225676 ATCGTCTTGCCCGTCA 225691 || |||||||| |||| Sbjct 213902 ATAGTCTTGCCGGTCA 213887 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 || || || || | ||| || || || || || || | ||||| ||||||| ||| | Sbjct 216455 AGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGG 216396 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || | ||||||||| |||||||| | | || ||||| || ||||| || ||| Sbjct 216395 CCATCCTCCAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCC 216336 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || || || ||||| ||| ||| ||||||||||| || || || || | |||| Sbjct 216335 TTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGCGTG 216276 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || | ||||| | ||| | |||||| Sbjct 216275 ATGGTCTTGCCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 >seq1075 Length=42261 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || ||||| | || | |||||||| || ||||| |||| |||||||| |||| || Sbjct 14874 CGGAGTCTTAATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAGCGTG 14815 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||| || ||||| || Sbjct 14814 CGGCCGTCCTCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATCCCC 14755 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| || |||| || ||||||||||| | ||||| || | Sbjct 14754 TCCTTGTCCTGGATCTTGGCTTTGACAGTGTCAATGGTGTCTGATGACTCCACTTCGAGG 14695 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || | ||||| || | ||| | ||||||| Sbjct 14694 GTTATGGTTTTTGCTGTCAATGTACGAACGAAAATTTGCATT 14653 >seq1541 Length=115782 Score = 120 bits (132), Expect = 7e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || || || || | ||| |||||||| || || |||| || || || |||| ||| Sbjct 44997 CGCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCCAGGGTT 45056 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || ||||| || |||||||| ||||||||||| || | || ||||| || || || ||| Sbjct 45057 CTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCT 45116 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| ||| || ||||||||||| | ||||| || | Sbjct 45117 TCCTTGTCCTGAATCTTGGCCTTTACGTTGTCGATGGTGTCGCTTGACTCCACCTCCAGG 45176 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||| ||||| || |||| Sbjct 45177 GTGATGGTCTTCCCGGTCA 45195 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 || || || || | ||| || || || || || |||| ||||| || |||| || | | Sbjct 43060 AGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGC 43119 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || | |||||| || ||||| ||||| | || ||||| || || || || ||| Sbjct 43120 CCATCCTCCAACTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCC 43179 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || ||||| ||| ||| ||||||||||| || || || || | |||| Sbjct 43180 TTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCAACCTCAAGCGTG 43239 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || | ||||| | ||| | ||||| Sbjct 43240 ATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 43277 Score = 91.5 bits (100), Expect = 4e-13 Identities = 88/112 (79%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||||||||| || || ||||||| ||||| ||||||| || | ||||| Sbjct 43294 AGCACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTACGACCATCC 43353 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG-TTGGTCGGGCGGAATACCT 225612 || |||||||| || || ||||| || || || |||||| || ||||||||| Sbjct 43354 TCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTTGGTCCGGAGGAATACCT 43405 >seq871 Length=23497 Score = 111 bits (122), Expect = 4e-19 Identities = 147/203 (72%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || |||||||| || | ||||||||| || ||||| |||| ||||| || |||| | Sbjct 11285 CGGAGTCTCAGAACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGCCAGCGAA 11344 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || || | ||| || || ||||| || || ||||| || Sbjct 11345 CGGCCGTCCTCCAGCTGCTTGCCCGCTA-GATGAGGCGCTGTTGTTCTGGGGGAATCCCC 11403 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| || ||| || ||||||||||| | || || || | Sbjct 11404 TCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATGGTGTCTGACGACTCAACTTCCAGG 11463 Query 225673 GTGATCGTCTTGCCCGTCAAAGT 225695 ||||| || || | ||||| || Sbjct 11464 GTGATGGTTTTACATGTCAACGT 11486 >seq1813 Length=181482 Score = 104 bits (114), Expect = 6e-17 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | || Sbjct 37579 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCTC 37638 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| |||| | | |||| || ||| || | || Sbjct 37639 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCGTACTCCCCAGGCGGGATACTTCATGC 37698 Query 7855 GTTAGCT 7861 ||||||| Sbjct 37699 GTTAGCT 37705 Score = 104 bits (114), Expect = 6e-17 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | || Sbjct 141779 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCTC 141720 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| |||| | | |||| || ||| || | || Sbjct 141719 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCGTACTCCCCAGGCGGGATACTTCATGC 141660 Query 7855 GTTAGCT 7861 ||||||| Sbjct 141659 GTTAGCT 141653 >seq1814 Length=106468 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/139 (75%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 ||| || |||| ||||||| || | ||||| | || ||||||||||||| |||||||| Sbjct 48734 TATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGTTTCGAATTAAACCACATGTTCCACCGC 48675 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | || | ||| || || |||||||||| || |||| ||||| | | |||| || Sbjct 48674 TTGTGCAGGCCCCCGCCAATTCCTTTGAGTTTCAATGTTGCCATCGTACTCCCCAGGCGG 48615 Query 7844 AATATTTA-CGCGTTAGCT 7861 | | ||| |||||| ||| Sbjct 48614 AGTGCTTATCGCGTTTGCT 48596 Score = 87.8 bits (96), Expect = 4e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 372630 ACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACG 372689 ||||||||| |||| ||| ||||||| |||||||||||||||| || |||| || || Sbjct 52901 ACAGAATAGGGGGTGGCGGCTGTTTATTAAAAACACAGGACTCTGCAAAGTACCAATACC 52960 Query 372690 ATGTATAGGGTCTGACAC 372707 |||||||| ||||||||| Sbjct 52961 ATGTATAGAGTCTGACAC 52978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192503483338916