Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq1813 634 6e-177 >seq1813 Length=181482 Score = 634 bits (702), Expect = 6e-177 Identities = 748/1007 (74%), Gaps = 4/1007 (0%) Strand=Plus/Plus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 || ||||||||| | || | || || |||||||| ||||| || | ||| | || Sbjct 117406 GATGACTGGCTTCGTCGTGATAGGTTTGTATTTGTTGGTTGGTCAGGTTTACTTTTGTTC 117465 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 165284 || |||||| |||||||||| ||||||||||| || || ||||| || || ||| Sbjct 117466 CCTTGTGCTTACTTTGCTCTTGGCGGTTGGCTTACCGGAACAACTTTTGTAACATCATGG 117525 Query 165285 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGCAGT 165343 |||||||| || | || || || || |||||||| ||| |||||| | ||||| || || Sbjct 117526 TATACTCATGGGTTGGCAAGCTCTTACCTTGAGGGCTGC-AACTTTTTGACTGCTGCCGT 117584 Query 165344 TTCTACTCCAGCAGAC-GCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTC 165402 || || ||||| || ||| ||| |||||||||| | || ||||| || || ||| Sbjct 117585 GTCAACCCCAGCTAACAGCT-TGGCTCATTCTCTTTTACTATGGTGGGGGCCGGAAGCTC 117643 Query 165403 AAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 165462 |||| || || | || ||||| ||||| || || || ||||||||||| || | || | Sbjct 117644 AAGGAGATTTTACTCGTTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTTGCATG 117703 Query 165463 GAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTA 165522 | || |||| | || || |||||||||||||| |||||| |||| || | || Sbjct 117704 GTGCTTTTGGCTTGATTGGATTCATGCTTCGCCAATTTGAATTGGCTCGCTCTGTCCAAT 117763 Query 165523 TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTC 165582 | || ||||| || || |||||||| ||||| |||||| | || || || ||| || Sbjct 117764 TACGACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCAGTTTTTGTATCTGTGTTCT 117823 Query 165583 TTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAA 165642 | || |||||||| || ||||| |||||||| || || || || || ||||||| Sbjct 117824 TAATTTATCCTCTTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGCAGCAA 117883 Query 165643 TCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACA 165702 ||||||| ||| | | || ||||||| || ||||||||||| || || || || || | Sbjct 117884 TCTTCCGTTTCATTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTTCCATA 117943 Query 165703 TGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAG 165762 ||||||| || || ||| | ||||| | || | || | ||| |||||||| | || | Sbjct 117944 TGATGGGTGTGGCTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGCAACTG 118003 Query 165763 TAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTA 165822 | || || ||||||| ||||||||| || || ||||||||| || ||| | || Sbjct 118004 TGGAAAACACTTTGTTTGAAGATGGAGATGGTGCGAACACTTTCCGTGCCTTTAACCCTA 118063 Query 165823 CTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTG 165882 | ||| || ||||| ||||||||||| ||||| |||||||||||||||||||| |||| Sbjct 118064 CACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTG 118123 Query 165883 GTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGG 165942 |||||||||| || || || |||||||| ||||||||||| ||||||||||| | || Sbjct 118124 GTATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTTCCTGTAACGG 118183 Query 165943 GACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATT 166002 | ||||||| || | |||||| | | ||||| || ||||||||| | || ||||||| Sbjct 118184 GGCTTTGGATGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGAGCATATGATT 118243 Query 166003 TTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAA 166062 |||| ||||| |||||| ||||||| || ||||| || |||||||| || || || |||| Sbjct 118244 TTGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTTTACACAAAAA 118303 Query 166063 ACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGA 166122 |||| || | ||||| || |||| |||||| |||| || ||| || |||||||| | Sbjct 118304 ACATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAGCCTCATGAAA 118363 Query 166123 ACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 | |||| |||||||| || ||| | ||| | || ||||| |||||| Sbjct 118364 ATCTTGTATTCCCTGAGGAGGTCCTACCACGTGGAAACGCTCTTTAA 118410 Score = 619 bits (686), Expect = 1e-172 Identities = 553/689 (80%), Gaps = 4/689 (1%) Strand=Plus/Plus Query 164225 GTGTTCCACTTCCTGATTGGCAT--CTATGCTTACATGGGTCGTGAGTGGGAACTTTCTT 164282 ||| |||||||||| | || | || |||| ||||||| ||||||||||| ||| | Sbjct 72407 GTGCTCCACTTCCTATTGGGTGTGGCT-TGCT-ACATGGGCCGTGAGTGGGAGCTTAGCT 72464 Query 164283 ACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGA 164342 |||| | || ||||||||||||||| ||||| ||||||||||| || || || || | Sbjct 72465 TCCGTTTGGGCATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCGGTTGCAGCTGCTA 72524 Query 164343 GTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGG 164402 ||||||||| || |||| ||| | |||||||| |||||||||| |||||||| | Sbjct 72525 CCGCAGTGTTCTTGATCTACCCTATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTCTTG 72584 Query 164403 GCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGC 164462 |||| || || || ||||||| ||| | || ||||| |||||||||||||| || |||| Sbjct 72585 GCATTTCCGGCACTTTCAACTTTATGATTGTGTTCCAAGCTGAGCACAACATTCTTATGC 72644 Query 164463 ACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGC 164522 |||| ||||| ||||| || || || || ||||||||||| |||||||| ||||| |||| Sbjct 72645 ACCCTTTCCACATGCTTGGTGTGGCTGGCGTGTTTGGCGGCTCTCTGTTTAGTGCTATGC 72704 Query 164523 ACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACT 164582 | ||||| |||||||||| | | |||||||| || ||||| ||||| ||| Sbjct 72705 ATGGTTCCTTGGTTACTTCCAGCTTAATCCGTGAGACTACTGAAAACGAGTCTGCTAACG 72764 Query 164583 ATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACT 164642 |||||||||||||||||| |||| ||||| ||||||||||| || ||||||||||||| Sbjct 72765 CTGGTTACAAGTTTGGTCAAGAAGGTGAAACTTACAACATCGTGGCTGCTCACGGTTACT 72824 Query 164643 TTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCC 164702 ||||||| || ||||||||||||||| |||||||||||| ||||| |||||||||||| Sbjct 72825 TTGGTCGCCTAATTTTCCAATACGCTAGCTTCAACAACTCTCGTTCTTTGCACTTCTTCC 72884 Query 164703 TCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCAT 164762 | || || |||||||| || || ||||||||||||||||| || | ||||| ||||| | Sbjct 72885 TAGCTGCTTGGCCTGTAGTAGGCATCTGGTTTACTGCTCTTGGTATCAGCACTATGGCGT 72944 Query 164763 TCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCA 164822 ||||||| |||||||||||||||||||| || | | || | || || |||||| ||| Sbjct 72945 TCAACCTTAACGGTTTCAACTTCAACCAATCTGTGGTTGACAGCCAAGGCCGTGTGATCA 73004 Query 164823 ACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTA 164882 |||| ||||| ||| | |||||||||| || || |||||||||||||||||||||| Sbjct 73005 ACACTTGGGCTGACATCATCAACCGTGCAAACCTTGGTATGGAAGTGATGCACGAGCGTA 73064 Query 164883 ATGCTCACAACTTCCCTCTCGACCTTGCT 164911 | ||||||||||||||||| ||||| ||| Sbjct 73065 ACGCTCACAACTTCCCTCTTGACCTAGCT 73093 Score = 199 bits (220), Expect = 4e-46 Identities = 194/247 (79%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 163968 TCGGTTGGTTCGGCGTCCTGATGATTCCCTGCCTGCTGGCAGCGAC-TACATGTTTCATC 164026 |||||||||| || || || ||||| || ||| || | || || | | ||||| || Sbjct 44444 TCGGTTGGTTTGGTGTTCTAATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATT 44386 Query 164027 ATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGT 164086 || |||||||||| |||||||||||||||||||||||| || || || || || ||||| Sbjct 44385 ATTGCCTTCATCGCTGCTCCTCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGT 44326 Query 164087 TCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATC 164146 || | ||||||| ||||||||||||||||||||| |||||||| | ||| || || Sbjct 44325 TCTTTGCTGTATGGTAACAACATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATT 44266 Query 164147 GGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGT 164206 ||||| ||||||||||| |||||||| || || || || |||||||| |||||||| Sbjct 44265 GGTCTTCACTTCTACCCTATCTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGC 44206 Query 164207 GGTCCTT 164213 || |||| Sbjct 44205 GGCCCTT 44199 Score = 199 bits (220), Expect = 4e-46 Identities = 194/247 (79%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 163968 TCGGTTGGTTCGGCGTCCTGATGATTCCCTGCCTGCTGGCAGCGAC-TACATGTTTCATC 164026 |||||||||| || || || ||||| || ||| || | || || | | ||||| || Sbjct 134914 TCGGTTGGTTTGGTGTTCTAATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATT 134972 Query 164027 ATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGT 164086 || |||||||||| |||||||||||||||||||||||| || || || || || ||||| Sbjct 134973 ATTGCCTTCATCGCTGCTCCTCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGT 135032 Query 164087 TCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATC 164146 || | ||||||| ||||||||||||||||||||| |||||||| | ||| || || Sbjct 135033 TCTTTGCTGTATGGTAACAACATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATT 135092 Query 164147 GGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGT 164206 ||||| ||||||||||| |||||||| || || || || |||||||| |||||||| Sbjct 135093 GGTCTTCACTTCTACCCTATCTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGC 135152 Query 164207 GGTCCTT 164213 || |||| Sbjct 135153 GGCCCTT 135159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557641755186480