Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1776 125 2e-23 seq1541 123 6e-23 seq1075 111 4e-19 >seq1776 Length=305386 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || ||||| || | |||||||| ||||| || ||||| |||||||| || | || Sbjct 214086 CCTCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGT 214027 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 || ||||| || || || || ||||||||||||||||||||||| | | ||||| Sbjct 214026 CCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCC 213967 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 || || || ||||| || || || | || | | |||| ||| || ||||| Sbjct 213966 CTCTTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGCTCGACTCCACCTCAAG 213907 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| || || |||||||| |||| |||||| Sbjct 213906 GGTGATAGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 213865 Score = 114 bits (126), Expect = 3e-20 Identities = 161/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || ||||| || | || || || ||||| || || |||||||| ||||| | ||| Sbjct 216459 CCTCAGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAGAGT 216400 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||| || | |||||||||||||| | |||||||||||| | | || || Sbjct 216399 GCGGCCATCCTCCAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCC 216340 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCA 152060 ||||| || ||||| || |||||| | || | | ||| ||| | ||| || ||| Sbjct 216339 CTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGA--CTCGACCTCA 216282 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||| || || ||||||| ||||| Sbjct 216281 AGCGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 >seq1541 Length=115782 Score = 123 bits (136), Expect = 6e-23 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || ||||| || | || || || ||||| || ||||||||||| || || | || Sbjct 43056 CCTCAGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGT 43115 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||| || | || |||||||| ||||||||||||||||| | | ||| || Sbjct 43116 ACGCCCATCCTCCAACTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATGCC 43175 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCA 152060 ||||| || ||||| || |||||| | || | | ||| ||| | ||| || ||| Sbjct 43176 CTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGA--CTCAACCTCA 43233 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||| || || ||||||| |||||| Sbjct 43234 AGCGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 43277 Score = 120 bits (132), Expect = 7e-22 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || ||||| || | |||||||| ||||| || |||||||| || || || | ||||| Sbjct 45000 AGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCCAGGGTTCTG 45059 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || || || |||||||| |||||||||||||| | | |||||||||| Sbjct 45060 CCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCTTCC 45119 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGA 152063 || || ||||| || || || | || | | |||| ||| ||| || || || Sbjct 45120 TTGTCCTGAATCTTGGCCTTTACGTTGTCGATGGTGTCGCTTGA---CTCCACCTCCAGG 45176 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || |||||||| |||| |||||| Sbjct 45177 GTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCAT 45217 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || ||||| || || || || || ||||| || || ||||||||||| || | || Sbjct 42828 CCTCAGCCTGAGCACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAAGGGT 42887 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||| || | || ||||| || || |||||||||||||| | || ||| || Sbjct 42888 ACGCCCATCCTCCAACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGCGGGATACC 42947 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || ||||| || || ||| | || | | |||| ||||| || || || Sbjct 42948 CTCCTTATCCTGAATCTTAGCCTTCACATTATCAATGGTGTCGCTGCTCTCAACCTCTAG 43007 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || || ||||| || |||| |||||| Sbjct 43008 CGTAATGGTCTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 43049 >seq1075 Length=42261 Score = 111 bits (122), Expect = 4e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | || | ||| |||||||||||||| |||||||||||||| || | || | Sbjct 14872 GAGTCTTAATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAGCGTGCG 14813 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || ||||||||||| || | ||||||||| | | || || || Sbjct 14812 GCCGTCCTCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATCCCCTC 14753 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||||||| || | | ||||||| ||| ||||| || || Sbjct 14752 CTTGTCCTGGATCTTGGCTTTGACAGTGTCAATGGTGTCTGATGACTCCACTTCGAGGGT 14693 Query 152066 AATAGTTTT 152074 || ||||| Sbjct 14692 TATGGTTTT 14684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153793983041194