Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1813 598 5e-166 seq810 82.4 9e-11 >seq1813 Length=181482 Score = 598 bits (662), Expect = 5e-166 Identities = 740/1006 (74%), Gaps = 10/1006 (1%) Strand=Plus/Plus Query 178851 GATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTC 178910 |||||||||||| |||||| |||| || |||||||||||||||||| | ||| ||||| Sbjct 117406 GATGACTGGCTTCGTCGTGATAGGTTTGTATTTGTTGGTTGGTCAGGTTTACTTTTGTTC 117465 Query 178911 CCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGG 178970 ||| ||||||| | || || ||||||||||| || || ||||| || || || || ||| Sbjct 117466 CCTTGTGCTTACTTTGCTCTTGGCGGTTGGCTTACCGGAACAACTTTTGTAACATCATGG 117525 Query 178971 TATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTA 179030 |||||||| ||| | || || || |||||||| || || || | |||||||| || Sbjct 117526 TATACTCATGGGTTGGCAAGCTCTTACCTTGAGGGCTGCAACTTTTTGACTGCTGCCGTG 117585 Query 179031 TCAACTCCTGCTGAC-GCTCTCGGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCA 179089 ||||| || ||| || ||| | | ||||| || | || ||||| || |||||||| Sbjct 117586 TCAACCCCAGCTAACAGCT-TGGCTCATTCTCTTTTACTATGGTGGGGGCCGGAAGCTCA 117644 Query 179090 GGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGG 179149 |||||||| || ||| ||||| || || || ||| ||||||| || | || || Sbjct 117645 AGGAGATTTTACTCGTTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTTGCATGG 117704 Query 179150 TGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTA 179208 ||| || | | || || ||||||||||| || |||||| | || || ||| ||| Sbjct 117705 TGCTTTTGGCTTGATTGGATTCATGCTTCGCCAATTTGAATTGGCTCGCTCT-GTCCAAT 117763 Query 179209 TTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTC 179268 | || ||||| || || || || |||||||| || ||| | || ||||| ||||| || Sbjct 117764 TACGACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCAGTTTTTGTATCTGTGTTCT 117823 Query 179269 TCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGA 179328 | || |||||||| || || || ||||||||||| || |||||||||||||| | Sbjct 117824 TAATTTATCCTCTTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGCAGCAA 117883 Query 179329 TTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACA 179388 | ||||| ||| | | || | || || || || |||||||| || ||||| ||||| | Sbjct 117884 TCTTCCGTTTCATTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTTCCATA 117943 Query 179389 TGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAG 179448 |||||||||| || ||| | | || | || | || ||||| |||||||| || || | Sbjct 117944 TGATGGGTGTGGCTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGCAACTG 118003 Query 179449 TAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTA 179508 | || ||||| | |||||||| | || | || || ||| || || | |||| Sbjct 118004 TGGAAAACACTTTGTTTGAAGATGGAGATGGTGCGAACACTTTCCGTGCCTTTAACCCTA 118063 Query 179509 CACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTG 179568 |||| || || || ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 118064 CACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTG 118123 Query 179569 GTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGG 179628 |||| || || || || || ||||| |||||||||||| | ||||||||||| | || Sbjct 118124 GTATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTTCCTGTAACGG 118183 Query 179629 GTCTTTGGACCTCTAGC---ATTGGTATTATTGGTCTTGCACTTAACCTTAGAGCTTATG 179685 | ||||||| ||| |||||| | | |||||||| || || |||||||| |||| Sbjct 118184 GGCTTTGGA---TGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGAGCATATG 118240 Query 179686 ACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATACCA 179745 | ||||| || |||||||| |||| ||||| |||||||| || || || || || || | Sbjct 118241 ATTTTGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTTTACACAA 118300 Query 179746 AGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAACCACATG 179805 | ||||| || || ||||| ||| | || || |||||||| | ||||| || |||| Sbjct 118301 AAAACATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAGCCTCATG 118360 Query 179806 AAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 |||| ||||||| ||||| || || | ||| | || |||||||| Sbjct 118361 AAAATCTTGTATTCCCTGAGGAGGTCCTACCACGTGGAAACGCTCT 118406 Score = 562 bits (622), Expect = 4e-155 Identities = 540/687 (79%), Gaps = 8/687 (1%) Strand=Plus/Plus Query 177899 TCCACTTCCTGATCGGTAT--CTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 |||||||||| | ||| | || ||| |||||||| ||||||||||| ||| | ||| Sbjct 72411 TCCACTTCCTATTGGGTGTGGCT-TGC-TACATGGGCCGTGAGTGGGAGCTTAGCTTCCG 72468 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 | || |||||||| ||||| |||||| ||||||||||| || || || || | || Sbjct 72469 TTTGGGCATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCGGTTGCAGCTGCTACCGC 72528 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076 || ||| | | || ||| | |||||||| |||||||| | |||||| || || || Sbjct 72529 AGTGTTCTTGATCTACCCTATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTCTTGGCAT 72588 Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136 ||||| ||||||| ||| |||| |||||||| ||||||||||| || |||||||| Sbjct 72589 TTCCGGCACTTTCAACTTTATGATTGTGTTCCAAGCTGAGCACAACATTCTTATGCACCC 72648 Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196 ||||||||| | || || ||||| || ||||| || |||||||| ||||| ||||| || Sbjct 72649 TTTCCACATGCTTGGTGTGGCTGGCGTGTTTGGCGGCTCTCTGTTTAGTGCTATGCATGG 72708 Query 178197 TTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAG--AACTAT 178254 ||| ||||||||||| | | ||||| || || || |||| |||| | ||| | Sbjct 72709 TTCCTTGGTTACTTCCAGCTTAATCCGTGAGACTACTGAAAACG--AGTCTGCTAACGCT 72766 Query 178255 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTC 178314 ||||||||||| |||||||||| || || ||||||||||| |||||||| |||||||| Sbjct 72767 GGTTACAAGTTTGGTCAAGAAGGTGAAACTTACAACATCGTGGCTGCTCACGGTTACTTT 72826 Query 178315 GGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTC 178374 |||||||| || ||||||||||| |||||||||||| ||||| ||||||||||||| Sbjct 72827 GGTCGCCTAATTTTCCAATACGCTAGCTTCAACAACTCTCGTTCTTTGCACTTCTTCCTA 72886 Query 178375 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 178434 || || |||||||| || || |||||||| |||||||||||| | ||||| ||||| ||| Sbjct 72887 GCTGCTTGGCCTGTAGTAGGCATCTGGTTTACTGCTCTTGGTATCAGCACTATGGCGTTC 72946 Query 178435 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAAC 178494 ||||| |||||||||||||||||||| || | | || || || ||| || | ||| Sbjct 72947 AACCTTAACGGTTTCAACTTCAACCAATCTGTGGTTGACAGCCAAGGCCGTGTGATCAAC 73006 Query 178495 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAAT 178554 || ||||| ||| | |||||||||| |||||||||||||| |||||||||||||| Sbjct 73007 ACTTGGGCTGACATCATCAACCGTGCAAACCTTGGTATGGAAGTGATGCACGAGCGTAAC 73066 Query 178555 GCTCACAACTTCCCTCTTGACCTCGCT 178581 ||||||||||||||||||||||| ||| Sbjct 73067 GCTCACAACTTCCCTCTTGACCTAGCT 73093 Score = 208 bits (230), Expect = 9e-49 Identities = 220/287 (77%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| | ||||| ||| ||| | || || || || |||||||||| ||||| || Sbjct 44484 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 44425 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATC-TGTTTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| || | |||| | | ||||| || | || ||| |||||||||| Sbjct 44424 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 44366 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||||||||||||||| || || ||||| || || ||||||| || ||||||| ||||| Sbjct 44365 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 44306 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 |||||| ||||||||| || | ||| | ||| || |||||||| |||||||| || || Sbjct 44305 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 44246 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTT 177883 |||||| || ||||| || ||||| ||||| ||||| || || |||| Sbjct 44245 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 44199 Score = 208 bits (230), Expect = 9e-49 Identities = 220/287 (77%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| | ||||| ||| ||| | || || || || |||||||||| ||||| || Sbjct 134874 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 134933 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATC-TGTTTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| || | |||| | | ||||| || | || ||| |||||||||| Sbjct 134934 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 134992 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||||||||||||||| || || ||||| || || ||||||| || ||||||| ||||| Sbjct 134993 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 135052 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 |||||| ||||||||| || | ||| | ||| || |||||||| |||||||| || || Sbjct 135053 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 135112 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTT 177883 |||||| || ||||| || ||||| ||||| ||||| || || |||| Sbjct 135113 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 135159 >seq810 Length=18296 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 176154 GAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAAC 176213 ||||| ||||| || | || || ||||||||||||||| | || |||| || | Sbjct 5162 GAGTGCGCTGAGGACGAATACATCCTGGATGCTGCTGAGAACGCCAACATTGACCTGCCC 5103 Query 176214 TACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTA 176273 ||||| |||||||| || || || ||||| ||||| || | || | |||||| || Sbjct 5102 TACTCCTGCCGCGCGGGCGCGTGCTCGAGCTGTGCGGGCATGATCGTGGAGGGCACAGTG 5043 Query 176274 GATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACT 176333 || || ||||| || || ||||| || || | ||| || || | ||||||||| Sbjct 5042 GACCAGAGCGACCAGTCCTTCCTGGACGACGGGCAGCAGGAGAAGGGCTACATTCTGACG 4983 Query 176334 TGTGT 176338 || || Sbjct 4982 TGCGT 4978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596293678734240