Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1075 149 1e-30 seq871 132 1e-25 seq1776 123 5e-23 seq1541 123 5e-23 seq1465 107 4e-18 seq1801 93.3 9e-14 seq1245 93.3 9e-14 seq1800 89.7 1e-12 >seq1075 Length=42261 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||||||||| ||||| ||||||||||| ||||| || || || ||||| ||| Sbjct 14844 TCTTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAG 14785 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || ||||| ||||| ||||||||||| |||||||| ||||| || || Sbjct 14784 ATGAGGCGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCTTTGACAGTG 14725 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| || | || |||||||| || || || || | ||||| || |||| Sbjct 14724 TCAATGGTGTCTGATGACTCCACTTCGAGGGTTATGGTTTTTGCTGTCAATGTACGAACG 14665 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 14664 AAAATTTGCATT 14653 >seq871 Length=23497 Score = 132 bits (146), Expect = 1e-25 Identities = 146/193 (76%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||||||||||||||| |||| ||||| ||||| || || || || || | | Sbjct 11315 TCTTTCTGGATGTTGTAGTCAGCCAGCGAACGGCCGTCCTCCAGCTGCTTGCCCGCTA-G 11373 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || ||||| || ||||| ||||||||||| |||||||| ||||| || | Sbjct 11374 ATGAGGCGCTGTTGTTCTGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCTTTGACATTC 11433 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| || | || ||||| || ||||| || |||| ||||| || |||| Sbjct 11434 TCAATGGTGTCTGACGACTCAACTTCCAGGGTGATGGTTTTACATGTCAACGTACGAACG 11493 Query 283089 AATATCTGCATTT 283101 | |||||||||| Sbjct 11494 AGAATCTGCATTT 11506 >seq1776 Length=305386 Score = 123 bits (136), Expect = 5e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||| || || |||||||||||||| | || |||||||| ||| Sbjct 216428 TCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGGCCATCCTCCAACTGCTTCCCGGCGAAG 216369 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | || ||||| ||||| |||||||| || || ||||| || || || | Sbjct 216368 ATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTG 216309 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| | ||||| || || ||||| ||||| || || | || || ||| Sbjct 216308 TCGATGGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTGAGGGTTTTGACG 216249 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 216248 AAGATTTGCAT 216238 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || ||||| || || ||||| || | ||| ||| |||||||||||||||||||| Sbjct 216237 ACCTCCGCGCAGACGCAGCACCAGGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGC 216178 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || ||||| || ||||| || || || || || || |||||||| || ||||| Sbjct 216177 CAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTC 216124 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || ||||| || || |||||||| | || || || |||||||||||||| || Sbjct 215643 ACCGCCCCGCAGCCGCAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGC 215584 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || ||||| || || ||||| ||||| |||| || || |||||| || Sbjct 215583 CAGGGTGCGCCCGTCCTCGAGCTGCTTCCCAGCAAAAATCAGCCGCTGCTGGTCAGGAGG 215524 Query 282992 AATACC 282997 |||||| Sbjct 215523 AATACC 215518 >seq1541 Length=115782 Score = 123 bits (136), Expect = 5e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || |||||||| |||||||| || || |||||||| | || || |||||||| Sbjct 42859 TCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCCAACTGCTTGCCGGCAAAA 42918 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| | || |||||| ||| ||||||||||| || || ||||| || || || || Sbjct 42919 ATCAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTATCCTGAATCTTAGCCTTCACATTA 42978 Query 283029 TCGATAGTGTCCGAAGCT-TCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || |||| || ||| || || || || || || ||||| || |||| ||||| || Sbjct 42979 TCAATGGTGT-CGCTGCTCTCAACCTCTAGCGTAATGGTCTTCCCAGTCAGGGTCTTGAC 43037 Query 283088 GAATATCTGCAT 283099 || |||||||| Sbjct 43038 AAAGATCTGCAT 43049 Score = 105 bits (116), Expect = 1e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||||||||||||||| || || || |||||||| | || || ||||| || Sbjct 43087 TCCTTCTGGATGTTGTAGTCAGCCAGGGTACGCCCATCCTCCAACTGCTTGCCGGCGAAA 43146 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | || ||||| || || ||||||||||| || ||||| || || || | Sbjct 43147 ATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTG 43206 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| | || || || || ||||| ||||| || || | || || ||| Sbjct 43207 TCGATGGTGTCGCTGGACTCAACCTCAAGCGTGATGGTCTTGCCAGTGAGGGTTTTGACG 43266 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 43267 AAGATCTGCAT 43277 Score = 89.7 bits (98), Expect = 1e-12 Identities = 96/126 (76%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || ||||| || || ||||| || | || || ||||||||||||||||| || Sbjct 43279 CCTCCGCGCAGCCGTAGCACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCC 43338 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTG-TTGGTCACCCGG 282991 || || || |||||||| || || || ||||||||||||| ||| || |||||| || Sbjct 43339 AGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTTGGTCCGGAGG 43398 Query 282992 AATACC 282997 |||||| Sbjct 43399 AATACC 43404 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| | ||||| || | || || || || ||||||||||| || Sbjct 43897 CCACCACGCAGGCGCAACACCAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGCC 43956 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || || ||||| ||||| || || |||||| ||| Sbjct 43957 AGAGTGCGCCCATCCTCAAGCTGCTTGCCAGCAAAAATCAACCGCTGCTGGTCAGGGGGA 44016 Query 282993 ATACC 282997 || || Sbjct 44017 ATGCC 44021 >seq1465 Length=98723 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || ||||| || | ||| || || ||||||||||||||||| Sbjct 61177 CCCCCCCGTAGCCGCAGAACCAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCG 61236 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| ||||||||||| |||||||| | || || |||||| ||| Sbjct 61237 AGTGTACGGCCATCCTCGAGTTGTTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 61296 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||| ||||| || Sbjct 61297 ATGCCCTCTTTGTCCTG 61313 >seq1801 Length=442331 Score = 93.3 bits (102), Expect = 9e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 317076 CTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACG 317135 ||||||||| || ||||| ||||| || || ||||| || ||| |||||| | | | Sbjct 278427 CTTGCCAGCCCCGTTGGGCCCGCACAGCCCGTACCGCTTGCCCCTCTTCAACCTGAGGTG 278368 Query 317136 GGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTC 317195 | |||||| || |||||||| ||||||| ||||| |||||| || | |||||||| Sbjct 278367 TGCGTTGTTGAGCAGAATCTTGGCACCATAGGCCAGGCTGAACTCGCAGTTGCACAGGTC 278308 Query 317196 CTCGCC 317201 |||||| Sbjct 278307 CTCGCC 278302 >seq1245 Length=60194 Score = 93.3 bits (102), Expect = 9e-14 Identities = 329/512 (64%), Gaps = 8/512 (2%) Strand=Plus/Minus Query 229870 TGTTCGACGCCATCGAAAACATCCCGGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGT 229929 |||||| ||||||||| ||||| ||||| | || ||| ||||| |||| Sbjct 44781 TGTTCGGCGCCATCGACTCAATCCCATGTGTCCAGAGGAAGGCGGACTGGGCAACCAAGT 44722 Query 229930 GGCTGGAACCCAGTAAATCGTTTGCAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTA 229989 || | || | | | ||||||| |||| | ||||| || | | ||||| ||||||| Sbjct 44721 GGATCGAGCGCGGACGGTCGTTTGGAGAGAGGCTCGTTGCCTTTGCATGCGTGGAGGGTA 44662 Query 229990 TTCTGTTCTCCGGGAGTTTCTGCGCCATCTTTTGGCTACGCAACAAGGGCGTCATGCCCG 230049 | | ||||| ||| |||||||||||||| ||||| || ||| ||||||||| Sbjct 44661 TCCACTTCTCGGGGTCATTCTGCGCCATCTTCTGGCTGAAGAAGCGGGGACTCATGCCCG 44602 Query 230050 GGCTCGGTCTGTCGAACGAATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCG 230109 | || || | | || || |||||||| | || || || || || || | | || ||| Sbjct 44601 GCCTTTGTTTTGCCAATGAGCTCATCAGCCGCGATGAGGGGCTGCA-CACCGACTTCGCG 44543 Query 230110 ----AGGTCTTGTATTCGAAGCTAAATAACAAACTACCTTTCGAAACGGTGAAACAAATC 230165 || || || || || | | || || || | || |||| | || Sbjct 44542 TGCCAGCTC---TACGAGACCCTCCAGGAGAAGCTGCCAGCTCAGACCGTGAGGGACATT 44486 Query 230166 GTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTT 230225 ||||| || | || | ||| ||| || || || || || | || ||| ||||| Sbjct 44485 GTCACTGATGCTGTGAAGATTGAGCAGGCTTTTATCTGTGAGGCGCTACCCTGCAGTCTT 44426 Query 230226 ATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTC 230285 || || || |||||| || ||| | | || || || || || || || | | | | Sbjct 44425 ATTGGAATCAATGCTTCCCTGATGTCGGAGTACATTGAGTTTGTTGCAGACAGGCTCTGC 44366 Query 230286 GTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTC 230345 | ||| ||||||||| | | || | ||| ||||| ||| ||||||||| || Sbjct 44365 CAGCAGCTGGGGTACGAGGCAATATACGGCACCACCAACCCTTTCAGTTTTATGGACCTG 44306 Query 230346 ATTTCACTCCAGGGGAAAACTAACTTCTTCGA 230377 || | ||| | || ||| | |||||||| || Sbjct 44305 ATCGCGCTCGATGGAAAAGCAAACTTCTTTGA 44274 >seq1800 Length=440711 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||| ||| | |||||||| | ||||| || | ||| ||||||||||| || Sbjct 106646 CCTCCTCGCAAGCGCAAGACCAGATGCAGGGTGCTCTCGTCTTGAATGTTGTAGTCCGCC 106705 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || || |||||||| | || ||||| || ||| Sbjct 106706 AGGGTGCGCCCATCCTCCAGCTGCTTTCCCGCAAAGATGAGCCGCTGTTGATCCGGAGGA 106765 Query 282993 ATACCCTCCTTGTCTTG 283009 || |||||| | || || Sbjct 106766 ATGCCCTCCATATCCTG 106782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046714871818356