Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1541 152 1e-31 seq1776 147 5e-30 seq1075 147 5e-30 seq871 105 2e-17 seq1669 96.9 8e-15 seq1465 91.5 4e-13 >seq1541 Length=115782 Score = 152 bits (168), Expect = 1e-31 Identities = 160/208 (77%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || || ||||| || || || || || || |||||||| |||||||| |||| Sbjct 45214 CAGATCTTTGTGAAGACCCTGACCGGGAAGACCATCACCCTGGAGGTGGAGTCAAGC--- 45158 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| ||||| || |||||||||||||| |||||||||||||| |||||| Sbjct 45157 GACACCATCGACAACGTAAAGGCCAAGATTCAGGACAAGGAAGGAATCCCTCCTGACCAG 45098 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || |||||||| || || ||||| || ||||| || || || || || |||||| Sbjct 45097 CAGAGGCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGAACCCTGGCTGACTATAAC 45038 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || || || |||| Sbjct 45037 ATCCAGAAGGAGTCCACTCTTCA-CTTG 45011 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || || || ||||| || ||||| || | ||| Sbjct 43274 CAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACGCTTGAGGTTGAGTCCAGCGAC 43215 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| || || ||||| || |||||||| Sbjct 43214 ACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAG 43155 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||| |||||||| || ||| | || ||||| | || || || || || ||| || Sbjct 43154 AGGCTTATTTTCGCCGGCAAGCAGTTGGAGGATGGGCGTACCCTGGCTGACTACAACATC 43095 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 43094 CAGAAGGAGTCGACCCTGCA-CTTG 43071 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || || || || ||||| || ||| ||| Sbjct 43046 CAGATCTTTGTCAAGACCCTGACTGGGAAGACCATTACGCTAGAGGTTGAGAGCAGCGAC 42987 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||||||||| || || || ||||| || |||||||| Sbjct 42986 ACCATTGATAATGTGAAGGCTAAGATTCAGGATAAGGAGGGTATCCCGCCTGACCAGCAG 42927 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || || ||||| || ||| | || ||||| | || ||||| ||||| ||| | Sbjct 42926 AGGCTGATTTTTGCCGGCAAGCAGTTGGAGGATGGGCGTACCCTTGCTGATTACAACATT 42867 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 42866 CAGAAGGAGTCGACCCTGCACCTGGT 42841 Score = 95.1 bits (104), Expect = 3e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||| ||||||||||||||||| || || ||||| ||||| || ||| | || ||||| || Sbjct 44611 AGGTATCCCTCCGGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAGTTGGAGGATGGGAG 44552 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 ||| || || || || ||| | || || || || || |||||||| ||| ||||| Sbjct 44551 GACCCTGGCTGACTACAACATTCAGAAGGAGTCCACCCTGCATCTGGTTCTGAGA 44497 >seq1776 Length=305386 Score = 147 bits (162), Expect = 5e-30 Identities = 159/208 (76%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || || ||||| || || || || || || |||||||| |||||||| ||| Sbjct 213868 CAGATCTTTGTGAAGACCCTGACCGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC--- 213924 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| ||||| || ||||||||||||||||| ||||| || || |||||| Sbjct 213925 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCCCCTGACCAG 213984 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | ||||||||||| || || ||||| || ||||| ||||| ||||| ||||| || Sbjct 213985 CAGAGGCTTATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCGGATTACAAT 214044 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || || || |||| Sbjct 214045 ATCCAGAAGGAGTCCACTCTTCA-CTTG 214071 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| ||||| || || || ||||| || ||||| || | ||| Sbjct 216241 CAAATCTTCGTCAAAACCCTCACTGGCAAGACCATCACGCTTGAGGTCGAGTCCAGCGAC 216300 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||||||||| || || || || || || |||||||| Sbjct 216301 ACCATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCAGCAG 216360 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||||||||| || ||| | || ||||| | ||||| ||||| || ||| | Sbjct 216361 AGGTTGATCTTCGCCGGGAAGCAGTTGGAGGATGGCCGCACTCTGGCCGACTACAACATT 216420 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 216421 CAGAAGGAGTCGACCCTGCA-CTTG 216444 Score = 95.1 bits (104), Expect = 3e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||| || || ||||||||||| || || ||||| ||||| || ||| | || ||||| || Sbjct 214949 AGGCATTCCCCCGGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAGTTGGAGGATGGGAG 215008 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||| || || || || ||| | || || || || || |||||||| |||||||| ||||| Sbjct 215009 GACCCTGGCTGACTACAACATTCAGAAGGAGTCTACCCTGCATCTGGTTTTGAGGCTCAG 215068 Score = 86.0 bits (94), Expect = 2e-11 Identities = 82/104 (79%), Gaps = 6/104 (6%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || ||||| ||||| |||||||| || || || |||||||| |||||||| |||| Sbjct 215079 CAGATTTTTGTGAAGACTCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCAAGC--- 215135 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||| || ||||| || ||||||||||| ||||| Sbjct 215136 GACACCATCGACAATGTCAAGGCGAAAATTCAGGACAAGGAAGG 215179 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || ||||| || || || ||||| || ||||| || ||| ||| Sbjct 214602 CAGATTTTTGTGAAGACCCTCACCGGCAAGACCATCACTCTGGAGGTTGAGAGCAGCGAC 214661 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| || ||||| |||||||||||||| ||||| Sbjct 214662 ACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGG 214702 >seq1075 Length=42261 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || | |||| |||||| || |||||||| ||||| |||||| Sbjct 14657 CAAATTTTCGTTCGTACATTGACAGCAAAAACCATAACCCTCGAAGTGGAGTCATCAGAC 14716 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | |||||| ||||| |||||||| || || || || || |||||||| Sbjct 14717 ACCATTGACACTGTCAAAGCCAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCAGCAG 14776 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || || ||||| ||| || Sbjct 14777 CGCCTCATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCTGATTACAACATC 14836 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || || || ||| | || || |||||| || Sbjct 14837 CAGAAAGAGTCTACTCTCCATTTGGTATTAAGACTCCGA 14875 >seq871 Length=23497 Score = 105 bits (116), Expect = 2e-17 Identities = 143/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 ||| | ||||| |||||||| || || || ||||||||||| ||||| |||||| Sbjct 11480 ACATGTAAAACCATCACCCTGGAAGTTGAGTCGTCAGACACCATTGAGAATGTCAAAGCC 11421 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || || || || || || || || || ||| | || || || Sbjct 11420 AAGATCCAGGACAAGGAGGGGATTCCCCCAGAACAACAGCGCCTCATC-TAGCGGGCAAG 11362 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || || | | || || || || ||| |||| ||||| || || || || Sbjct 11361 CAGCTGGAGGACGGCCGTTCGCTGGCTGACTACAACATCCAGAAAGAGTCTACTCTCCAC 11302 Query 178125 CTTGTTTTGAGACTCAGA 178142 | ||| |||||||| || Sbjct 11301 TTGGTTCTGAGACTCCGA 11284 >seq1669 Length=175719 Score = 96.9 bits (106), Expect = 8e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||||||||||||||| || || |||||||| || || || Sbjct 49045 TCACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCCGATACCATCGACAATGTGAAGG 48986 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 |||||||||||||| || || ||||||||||||||||| | || ||||| || || Sbjct 48985 CCAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGAGGCTCATCTTTGCAGG 48928 >seq1465 Length=98723 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 178011 CAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTC 178070 ||||||||||| || || || || |||||||| || || ||||| || || ||||| ||| Sbjct 61313 CAGGACAAAGAGGGCATTCCCCCTGACCAGCAGCGGCTCATCTTTGCTGGGAAACAACTC 61254 Query 178071 GAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||| | || || || || || ||| |||| || || || |||||||| || ||| Sbjct 61253 GAGGATGGCCGTACACTCGCTGACTACAACATCCAGAAGGAGTCCACACTGCACCTGGTT 61194 Query 178131 TTG 178133 || Sbjct 61193 CTG 61191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203703223029916