Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1541 123 2e-23 seq1776 122 8e-23 seq1800 102 8e-17 seq871 86.0 6e-12 >seq1541 Length=115782 Score = 123 bits (136), Expect = 2e-23 Identities = 156/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||||| || ||||||||| ||||| ||||| | ||||| ||| | || || Sbjct 43068 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGCCCATCCTC 43127 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 | ||||||||||||||| || || | ||| ||||| | || | || |||||||||| | Sbjct 43128 CAACTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC-T 43186 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || | || || | || | | | |||||||| ||||| ||||| | ||| || || | Sbjct 43187 GAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCAACCTCAAGCGTGATGGTCT 43246 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || || || || ||||| ||||||||| Sbjct 43247 TGCCAGTGAGGGTTTTGACGAAGATCTGCATG 43278 Score = 123 bits (136), Expect = 2e-23 Identities = 156/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| || || ||| ||||||||| ||||||||||| | ||||| | | || || Sbjct 45008 CACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCCAGGGTTCTGCCATCCTC 45067 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| ||||| || || | ||| ||||| | || | | ||||||||| | Sbjct 45068 CAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCC-T 45126 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || | || || | ||| | | | |||||||| ||||||||||||| || || || | Sbjct 45127 GAATCTTGGCCTTTACGTTGTCGATGGTGTCGCTTGACTCCACCTCCAGGGTGATGGTCT 45186 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || ||||| ||||| || || ||||||||| Sbjct 45187 TCCCGGTCAGGGTCTTCACAAAGATCTGCATG 45218 Score = 111 bits (122), Expect = 1e-19 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 |||||| ||||| || ||||||||||||||| || || | ||||| ||| | || || Sbjct 42840 CACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTC 42899 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 | |||||||||||| || ||||| | ||| ||||| | || | | |||||| ||| | Sbjct 42900 CAACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTATCC-T 42958 Query 41773 GATTTTTTG-CTTCA-ACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 || | || | ||||| | | | | |||||||| ||| ||||| | ||| || || Sbjct 42959 GAATCTTAGCCTTCACATTATCA-ATGGTGTCGCTGCTCTCAACCTCTAGCGTAATGGTC 43017 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| ||||| || || |||||||| Sbjct 43018 TTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 43049 Score = 102 bits (112), Expect = 8e-17 Identities = 97/123 (79%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || |||| |||||| || || || |||||| || ||||| ||||||| Sbjct 43278 GCCTCCGCGCAGCCGTAGCACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGC 43337 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTG-TTGGTCCGCGG 41753 ||||| || | || ||||||||||||||||| || ||||| ||||| |||||||| | Sbjct 43338 CAGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTTGGTCCGGAG 43397 Query 41754 GAA 41756 ||| Sbjct 43398 GAA 43400 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || |||||||| || || || ||||||||||||||| ||||| | Sbjct 43896 GCCACCACGCAGGCGCAACACCAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGC 43955 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || |||||| | || || ||||||||||| || || |||| ||||| ||||| | ||| Sbjct 43956 CAGAGTGCGCCCATCCTCAAGCTGCTTGCCAGCAAAAATCAACCGCTGCTGGTCAGGGGG 44015 Query 41755 AACGC 41759 || || Sbjct 44016 AATGC 44020 Score = 89.7 bits (98), Expect = 5e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||||||||| ||| ||||||||||||||| ||||| | ||||| | | | || || Sbjct 44504 ACCAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTCCTCCCATCCTCC 44563 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 | |||||||||||| || || || ||||| ||||||| Sbjct 44564 AACTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCG 44600 >seq1776 Length=305386 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||||| || ||||||||||||||| ||||||| || ||||| | || || Sbjct 216447 CACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGGCCATCCTC 216388 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 | |||||| |||||||| |||| | ||| ||||| | ||||| || |||||| ||| | Sbjct 216387 CAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCC-T 216329 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || | || || | || | | | |||||||| ||||| ||||| | ||| || || | Sbjct 216328 GAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCT 216269 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || || || ||||| || ||||| Sbjct 216268 TGCCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| || || ||| ||||||||| || || || || | ||||| | | || || Sbjct 214074 CACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTGCCATCCTC 214015 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| ||||| || || | ||| ||||| | ||||| | ||| |||||| | Sbjct 214014 CAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCCTCTTTGTCC-T 213956 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || | || || | ||| | | | |||||||||||||||||||| | || || || | Sbjct 213955 GAATCTTGGCCTTCACGTTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCT 213896 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || ||||| ||||| || || ||||||||| Sbjct 213895 TGCCGGTCAGGGTCTTCACAAAGATCTGCATG 213864 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | |||||||| || || ||||||||| ||||| ||||| | Sbjct 215642 CCGCCCCGCAGCCGCAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 215583 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||||||| |||| ||||||||||| || || || ||||| ||||| ||||| | ||| Sbjct 215582 AGGGTGCGCCCGTCCTCGAGCTGCTTCCCAGCAAAAATCAGCCGCTGCTGGTCAGGAGGA 215523 Query 41756 A 41756 | Sbjct 215522 A 215522 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||||| || || ||| ||||| || ||||| ||||| | Sbjct 216236 CCTCCGCGCAGACGCAGCACCAGGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGCC 216177 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 |||||||| |||| |||||||||||||| ||||| |||| ||||| ||||| Sbjct 216176 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTC 216124 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || ||||||||||| || ||||||||||||||| ||||| | ||||| | | | || Sbjct 215059 AAAACCAGATGCAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTCCTCCCATCC 215000 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGC 41759 || | |||||||||||| || || || ||||| ||||||| ||||| || Sbjct 214999 TCCAACTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGC 214951 >seq1800 Length=440711 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || | || || ||||||||||| |||||||| | |||||||| ||||| | Sbjct 106645 GCCTCCTCGCAAGCGCAAGACCAGATGCAGGGTGCTCTCGTCTTGAATGTTGTAGTCCGC 106704 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || |||||||| || || || || || |||||||| |||| || Sbjct 106705 CAGGGTGCGCCCATCCTCCAGCTGCTTTCCCGCAAAGATGAGCCGCTGTTGATCCGGAGG 106764 Query 41755 AACGCTCTCCTTGTCC 41770 || || |||| | ||| Sbjct 106765 AATGCCCTCCATATCC 106780 >seq871 Length=23497 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/193 (71%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||| ||||| ||||| | || | || |||| || ||||||||||| || | Sbjct 11314 CTCTTTCTGGATGTTGTAGTCAGCCAGCGAACGGCCGTCCTCCAGCTGCTTGCCCGC-TA 11372 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-G 41789 || ||||||||||| || | ||||| | |||||||||| || | || |||| || Sbjct 11373 GATGAGGCGCTGTTGTTCTGGGGGAATCCCCTCCTTGTCC-TGGATCTTGGCTTTGACAT 11431 Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | ||||| |||||| || |||| || || ||||||| |||| ||| | Sbjct 11432 TCTCAATGGTGTCTGACGACTCAACTTCCAGGGTGATGGTTTTACATGTCAACGTACGAA 11491 Query 41850 CGAAAATCTGCAT 41862 ||| ||||||||| Sbjct 11492 CGAGAATCTGCAT 11504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462293517256800