Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq487 82.4 6e-11 >seq487 Length=466406 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || |||| ||||| ||||| ||| ||| ||| | | Sbjct 176124 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTGGAGAGCTCC 176183 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | || || ||| || || || || | ||| ||| || Sbjct 176184 GACACCATCGACAACGTGAAAGCTAAGATTCAGGACAAGGAGGGAATTCCCCCAGACCAG 176243 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || || || || ||||| ||||||||||| | |||| | || || ||||| Sbjct 176244 CAGAGGCTGATTTTCGCTGGCAAGCAATTGGAAGACGGCCGAACTCTCGCGGACTACAAC 176303 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || |||||||| || ||||||||| ||||| | || || | |||||| Sbjct 176304 ATCCAAAAGGAGTCGACTCTTCACTTGGTGCTTCGGTTGAGGGGAGGG 176351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410776087753718