Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3072 113 7e-20 seq2625 113 7e-20 seq4017 102 1e-16 seq4073 84.2 3e-11 >seq3072 Length=975934 Score = 113 bits (124), Expect = 7e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || || | ||||| | || || || || || ||| | ||| |||| ||| Sbjct 271810 AATGCAGATTTTCGTGAAGACCTTGACTGGTAAGACCATTACTCTTGAGGTTGAGAGCTC 271869 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | ||||| || || | || ||| |||||||| || || || || || || || | Sbjct 271870 A-GATACTATCGACAACGTGAAGACGAAGATTCAAGACAAGGAGGGAATCCCCCCAGACC 271928 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | |||||||||||||| ||| | |||||| | ||| ||| ||||||| Sbjct 271929 AGCAGAGGTTGATTTTTGCAGGAAAGCAACTCGAGGATGGAAGAATTCTAGCGGATTATA 271988 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||| ||||| ||||| |||||||| ||||| | ||| | || ||||| Sbjct 271989 ATATCCAAAAGGAATCCACTTTGCACTTGGTGCTCCGTCTTCGTGGTGG 272037 >seq2625 Length=346021 Score = 113 bits (124), Expect = 7e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | || || || || ||||| || |||||| | ||| | || ||| Sbjct 281563 ATGCAAATCTTCGTTAAAACCCTCACCGGCAAGACCATAACTCTTGAGGTGGAGAGCTC- 281621 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| ||| ||||| || || ||||| || || || ||||| Sbjct 281622 TGACACGATTGATAACGTGAAAACGAAGATTCAGGACAAGGAAGGCATCCCTCCAGATCA 281681 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | |||||||| ||||| ||| | |||||| | | || || | || || || Sbjct 281682 GCAGAGGTTGATTTTTGCCGGAAAGCAACTTGAGGATGGGAGGACGTTGGCCGACTACAA 281741 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| || | ||||||||||| | | |||||||||| Sbjct 281742 CATCCAAAAGGAATCTACCCTCCATTTGGTTTTGAGGCTGAGAGGTGGTAT 281792 Score = 113 bits (124), Expect = 7e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || || | ||||| | ||||| || || || ||| | ||| |||| ||| Sbjct 282018 AATGCAGATTTTCGTGAAGACCTTGACAGGTAAGACCATTACTCTTGAGGTTGAGAGCTC 282077 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | ||||| || || | || ||| |||||||| || || || || || || || | Sbjct 282078 A-GATACTATCGACAACGTGAAGACGAAGATTCAAGACAAGGAGGGAATCCCCCCAGACC 282136 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | ||||| |||||||| ||| | |||||| | ||| ||| ||||||| Sbjct 282137 AGCAGAGGTTGATTTTCGCAGGAAAGCAACTCGAGGATGGAAGAATTCTAGCGGATTATA 282196 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||| ||||| ||||| |||||||| ||||| | ||| | || ||||| Sbjct 282197 ATATCCAAAAGGAATCTACTTTGCACTTGGTGCTCCGTCTTCGTGGTGG 282245 Score = 102 bits (112), Expect = 1e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | |||||| | || || || || || ||| | ||| | || ||| Sbjct 281791 ATGCAGATTTTTGTGAAGACATTGACCGGTAAGACCATCACTCTTGAGGTGGAGAGCTC- 281849 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | ||| ||| ||||| || || ||||| || || || ||||| Sbjct 281850 TGACACGATTGACAACGTGAAAACGAAGATTCAGGACAAGGAAGGCATCCCTCCAGATCA 281909 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | |||||||||||||| ||| | ||||| |||| || || | || || || Sbjct 281910 GCAGAGGTTGATTTTTGCAGGAAAGCAACTTGAGGACGGTCGTACCTTGGCCGACTACAA 281969 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 |||||||| || || || | |||||||| || Sbjct 281970 CATTCAAAAGGAGTCTACCCTCCATTTGGTCTT 282002 Score = 96.9 bits (106), Expect = 5e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || || || || ||| | ||| | ||| | Sbjct 280195 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACCATCACTCTTGAGGTCGAAAGCTCT 280254 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || ||||||||||||||| || || || || ||||| || Sbjct 280255 GATACGATCGACAATGTGAAGACGAAAATTCAAGATAAGGAGGGCATTCCCCCTGACCAG 280314 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | ||||| || || |||||| | || || |||| || | | || || || Sbjct 280315 CAGCGGTTGATTTTCGCCGGTAAACAACTCGAAGACGGTCGCACGCTGGCCGACTACAAC 280374 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || |||||||| || ||||||||| | || || | | ||||| ||||| ||| || Sbjct 280375 ATCCAAAAAGAGTCCACTTTGCATCTTGTGTTGAGGCTGCGAGGAGGTATGCAAATTT 280432 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || ||||| || || ||| | ||| |||| Sbjct 281335 ATGCAGATTTTCGTCAAAACCTTGACTGGCAAGACGATTACTTTGGAGGTTGAGAGTTCC 281394 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||| || || || || || || || || Sbjct 281395 GACACCATTGACAATGTGAAAACCAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCAG 281454 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | |||||||| || ||||| | || ||| |||| ||| | | ||||| || Sbjct 281455 CAGAGATTGATTTTTGCCGGGAAACAGCTTGAAGATGGTCGGACACTCGCCGATTACAAC 281514 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||||| ||||| || ||||||||||| Sbjct 281515 ATCCAAAAGGAATCTACCTTGCATTTGGT 281543 >seq4017 Length=874442 Score = 102 bits (112), Expect = 1e-16 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 ||||| || ||| | |||||| | || || ||||| || ||| | ||| ||||| || | Sbjct 473343 ATGCAGATCTTTGTCAAGACATTGACTGGAAAAACCATCACTTTGGAGGTTGAAAGCTCA 473402 Query 124598 TGATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || || | || ||| || || || ||||| || ||||| || || || | Sbjct 473403 -GATACCATCGACAACGTGAAGACA-AAGATCCAGGATAAGGAGGGTATTCCTCCCGACC 473460 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || | | || ||||| || || || | |||||| |||| || || | ||| |||| Sbjct 473461 AGCAGCGATTGATCTTTGCCGGTAAGCAGCTCGAGGATGGTCGTACCTTGGCAGACTATA 473520 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||| ||||| || |||||| | || |||| || | || ||||| Sbjct 473521 ATATTCAAAAGGAATCTACCTTGCATCTTGTGCTACGATTGAGGGGAGGTAT 473572 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || || ||||| ||| | ||| | ||| | Sbjct 473571 ATGCAGATCTTCGTGAAGACCTTGACCGGGAAGACTATCACTCTCGAGGTCGAAAGCTCT 473630 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| || || || || || ||||| || || || ||||| Sbjct 473631 GACACCATCGACAATGTCAAAACCAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCAG 473690 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||||||||| || | || ||| | ||||| | | ||||| ||| Sbjct 473691 CAGAGATTGATCTTTGCAGGAAAGCAGCTGGAAGATGGACGAACCCTGGCGGATTACAAT 473750 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||||||||||||| ||||| | ||| | | | ||||||||| Sbjct 473751 ATCCAAAAAGAATCAACTCTGCATCTTGTTCTGAGGCTGCGAGGTGGT 473798 >seq4073 Length=488838 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||| || || || || || || ||||| || || ||||| || ||||| || || Sbjct 173599 AAAATTCAGGACAAGGAGGGGATTCCTCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAG 173540 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| |||| || | | ||||| || || ||||| ||||| || | ||| Sbjct 173539 CAGCTCGAGGATGGTCGCACTCTGGCGGATTACAACATCCAAAAGGAATCGACGCTTCAT 173480 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| | | |||| ||||| Sbjct 173479 TTGGTTTTGAGGCTCAGAGGAGGTAT 173454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755416933481600