Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2625 95.1 2e-14 seq3072 91.5 2e-13 seq4017 89.7 8e-13 >seq2625 Length=346021 Score = 95.1 bits (104), Expect = 2e-14 Identities = 153/228 (67%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||||| || ||||||||||| || ||||||||||| | Sbjct 282245 CCACCACGAAGACGGAGCACCAAGTGCAAAGTAGATTCCTTTTGGATATTATAATCCGCT 282186 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||| |||| | ||| || | ||| ||||| || |||||||| || ||||| || || || Sbjct 282185 AGAATTCTTCCATCCTCGAGTTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGGGGG 282126 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| || || ||||| ||||||||| || || || Sbjct 282125 ATTCCCTCCTTGTCTTGAATCTTCGTCTTCACGTTGTCGATAGTATCTGAGCTCTCAACC 282066 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || || || || |||||||| || || || | ||| || |||||| Sbjct 282065 TCAAGAGTAATGGTCTTACCTGTCAAGGTCTTCACGAAAATCTGCATT 282018 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || || | |||||||| || |||||||| || || || ||||| | Sbjct 281561 CCTCCTCTCAGCCTCAGGACCAAATGCAAGGTAGATTCCTTTTGGATGTTGTAATCGGCG 281502 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | ||||| || |||||||||||||| ||||| || |||||| Sbjct 281501 AGTGTCCGACCATCTTCAAGCTGTTTCCCGGCAAAAATCAATCTCTGCTGGTCTGGAGGA 281442 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| || || ||||| Sbjct 281441 ATTCCCTCCTTGTCTTG 281425 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || || | ||| || || | ||| | |||||| || || |||||||||||| | Sbjct 281105 CCTCCCCTCAATCTCAAGACGAGATGGAGAGTAGACTCCTTCTGTATATTATAATCGGCC 281046 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| || || || || || || || ||||| |||||||| || || || |||||| Sbjct 281045 AGCGTTCGGCCGTCCTCCAACTGCTTACCTGCAAAGATCAATCTCTGTTGGTCTGGAGGA 280986 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || |||||||| Sbjct 280985 ATACCCTCCTTATCTTG 280969 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || || || |||||||| | |||||||| || || || || || | Sbjct 281789 CCACCTCTCAGCCTCAAAACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGCC 281730 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || || | ||| || | ||| ||||| ||||||||||| || |||||||| ||||| Sbjct 281729 AACGTCCTCCCATCCTCAAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGAGGG 281670 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 281669 ATGCCTTCCTTGTCCTG 281653 >seq3072 Length=975934 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/228 (67%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||||| || ||||| ||||| || ||||||||||| | Sbjct 272037 CCACCACGAAGACGGAGCACCAAGTGCAAAGTGGATTCCTTTTGGATATTATAATCCGCT 271978 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||| |||| | ||| || | ||| ||||| ||||||||||| || ||||| || || || Sbjct 271977 AGAATTCTTCCATCCTCGAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGG 271918 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| || || ||||| ||||||||| || || || Sbjct 271917 ATTCCCTCCTTGTCTTGAATCTTCGTCTTCACGTTGTCGATAGTATCTGAGCTCTCAACC 271858 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || || || || ||||| || || || || | ||| || |||||| Sbjct 271857 TCAAGAGTAATGGTCTTACCAGTCAAGGTCTTCACGAAAATCTGCATT 271810 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || || || |||||||| | |||||||| || || || || || | Sbjct 271581 CCACCTCTCAGCCTCAACACCAAATGGAGGGTAGATTCGTTTTGGATGTTGTAGTCGGCC 271522 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || || | ||| || | ||| ||||| ||||||||||| || |||||||| ||||| Sbjct 271521 AACGTCCTCCCATCCTCAAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGAGGG 271462 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 271461 ATGCCTTCCTTGTCCTG 271445 >seq4017 Length=874442 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || || | || | ||| | ||| |||||||| ||||| ||||| | Sbjct 473797 CCACCTCGCAGCCTCAGAACAAGATGCAGAGTTGATTCTTTTTGGATATTGTAATCCGCC 473738 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || | || ||||| ||||| |||||||| |||||||| |||||| Sbjct 473737 AGGGTTCGTCCATCTTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCGGGAGGA 473678 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || || || Sbjct 473677 ATTCCTTCCTTGTCCTG 473661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743487950391040