Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2625 89.7 4e-13 seq487 86.0 5e-12 >seq2625 Length=346021 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | |||| || || || || || |||||||||||||||||||| Sbjct 282018 TCCTCCCCTCAGCCTCAAGACCAAATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGC 281959 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || || || || | ||| || || ||| | || | || || ||||| || Sbjct 281958 CAAGGTACGACCGTCCTCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGG 281899 Query 18218 CACGCCTTCCTTATCGGCAA--TTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCG 18275 | ||||||||| || || || ||| || || | ||| |||||| | ||| Sbjct 281898 GATGCCTTCCTTGTCCTGAATCTTCGTT--TTCACGTTGTCAATCGTGTCAGAGCTCTCC 281841 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | || ||||||||||| || |||||||| ||||| Sbjct 281840 ACCTCAAGAGTGATGGTCTTACCGGTCAATGTCTTCACAAAAATCTGCAT 281791 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| | ||| || || | ||||| || || ||||| |||||||||||||||||| Sbjct 280649 CCTCCCCTCAATCTCAGAACAAGATGAAGCGTGGACTCTTTCTGAATGTTGTAGTCGGCC 280590 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | || || | ||||||||| || |||| | || || ||||| ||| Sbjct 280589 AGCGTCCGGCCGTCCTCTAGTTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGG 280530 Query 18219 ACGCCTTCCTTATC--GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | || |||||||| || || || |||||| | | | |||||| |||| Sbjct 280529 ATTCCCTCCTTATCCTGGATCTTAGT--CTTGACATTGTCGATGGTGTCAGAACTCTCGA 280472 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| ||| |||| || |||| ||||| || ||||||||||| Sbjct 280471 CCTCGAGGGTAATGGTTTTCCCCGTCAGAGTTTTAACGAAAATTTGCAT 280423 >seq487 Length=466406 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | ||| |||| || || || || || ||||| ||||||||||| || Sbjct 183008 CCTCCCCTGAGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCG 182949 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | || || || || |||| | |||||| ||||| || Sbjct 182948 AGGGTACGACCATCTTCGAGCTGCTTACCAGCGAAGATCAATCTTTGCTGATCAGGAGGA 182889 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || ||| | | |||| | | || | | |||||| | ||| Sbjct 182888 ATGCCCTCCTTGTCCTGAATCT-TAGCTTTAACGTTGTCGATAGTGTCGGAGCTCTCCAC 182830 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| |||||||||||| |||||||| || || |||||| Sbjct 182829 TTCCAGAGTGATCGTTTTGCCGGTCAGCGTTTTTACGAAGATCTGCATT 182781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379324873594065