Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq1839 129 2e-25 >seq1839 Length=1212 Score = 129 bits (142), Expect = 2e-25 Identities = 134/174 (77%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 48641 GAAGAAGCCGAACCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACAT 48700 ||| ||||||||||| ||||||| || ||||| | || || || || ||| | | || Sbjct 200 GAAAAAGCCGAACCCGATCGACATTCACGTCGGGTCACGGATTCGTCTGCGCAGAACTAT 141 Query 48701 CATCGGCATGAGCCAGGAGACGCTGGCTGCGCAT--CTCGGCATCACCTTCCAGCAGGTC 48758 | |||||||| ||||| | ||||| ||| | |||||||| || || |||||| || Sbjct 140 GCTGGGCATGAGTCAGGAAAAGCTGG--GCGAAAGCCTCGGCATTACTTTTCAGCAGATC 83 Query 48759 CAGAAATACGAAAAGGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCAGGCCATC 48812 ||||||||||| |||||| | |||||||||||||| ||| | |||||| |||| Sbjct 82 CAGAAATACGAGAAGGGCACGAACCGCGTCGGCGCAAGCCGTCTGCAGAACATC 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183600579834132