Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4017 127 2e-24 seq4073 118 1e-21 seq487 113 4e-20 seq2625 111 2e-19 seq3072 95.1 1e-14 >seq4017 Length=874442 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || ||||| || | |||| |||||||| ||||| |||||||| ||| | Sbjct 473341 CCACCTCTCAACCGCAACACAAGATGAAGAGTAGACTCCTTTTGGATGTTATAGTCGGCC 473282 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||||||||||| ||||| |||||| || ||||| || || || Sbjct 473281 AAAGTCCTGCCATCTTCGAGCTGTTTCCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGA 473222 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| |||| || || | | || | ||||||| |||||| Sbjct 473221 ATGCCTTCCTTGTC-TTGAATTTTGGTCTTCACATTGTCGATGGTGTCGGAACTCTCCAC 473163 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | |||||||| |||| || || ||||| || |||||| Sbjct 473162 CTCCAAGGTGATGGTCTTGCCTGTCAGAGTCTTCACGAAAATCTGCATA 473114 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| || | ||| | |||||||| ||||||||||| || ||| | Sbjct 472657 CCACCTCTCAACCTCAACACGAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCC 472598 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| || ||||||||||| || |||||| ||| ||||| || || || Sbjct 472597 AGAGTTCTACCGTCCTCAAGCTGTTTACCTGCGAAGATCAAACGCTGCTGGTCTGGGGGA 472538 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || ||| || || | | || | ||||||| ||| ||| Sbjct 472537 ATACCCTCCTTATCTTGGATCTTAGTCTTCACATTATCGATGGTGTCGGAACTCTCAACC 472478 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | ||||| || |||||||| || ||||| ||||||||| || Sbjct 472477 TCGAGAGTAATGGTCTTTCCTGTCAACGTCTTGACGAAGATTTGCATACCT 472427 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | || || | ||||| |||||||| ||||| ||||| || ||| | Sbjct 473113 CCACCTCTCAACCTCAGGACGAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGCC 473054 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||||||||| || || || |||||| || |||||||| ||||| Sbjct 473053 AGGGTCCTTCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCTGGAGGA 472994 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || |||||| || | | || | ||||| | ||||||| Sbjct 472993 ATACCCTCCTTATCTTGGATTTTAGTCTTCACATTGTCGATAGTGTCAGAACTCTCCACC 472934 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | |||||||| |||| || || ||||| || |||||| || Sbjct 472933 TCCAAGGTTATAGTCTTGCCTGTCAGAGTCTTCACGAAAATCTGCATACCT 472883 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || ||||| | |||||||| ||||| ||||||||||| || ||| ||| || Sbjct 472187 CAAGACCAAGTGCAATGTAGACTCCTTTTGGATGTTATAATCAGCCAATGTCCTCCCATC 472128 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||||| || || || || | ||||| | ||||| |||||||| || || || ||||| Sbjct 472127 CTCGAGTTGCTTGCCGGCGAAAATCAGCCTCTGCTGGTCGGGAGGAATACCCTCCTTGTC 472068 Query 139672 GGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || || ||| | | || | || |||| | || ||||||| || | | Sbjct 472067 -CTGAATCTTGGTCTTAACATTGTCGATCGTATCGGAGCTTTCGACCTCAAGAGTGATGG 472009 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || ||||| || || || || || ||||| Sbjct 472008 TCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 471975 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || || |||||||| || || ||||| || || | || | ||||| ||||| || || Sbjct 473767 GTTGATTCTTTTTGGATATTGTAATCCGCCAGGGTTCGTCCA-TCTTCCAGCTGCTTTCC 473709 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||| | |||||||||||||| || ||||| ||||| ||| || ||| Sbjct 473708 TGCAAAGATCAATCTCTGCTGATCGGGAGGAATTCCTTCCTTGTCCTGGATCTTGGTTTT 473649 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | || ||||| | || | ||||| |||||||| || Sbjct 473648 GACATTGTCGATGGTGTCAGAGCTTTCGACCTCGAGAGTGATAGTCTTCCCGGTCAAGGT 473589 Query 139747 TTTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 473588 CTTCACGAAGATCTGCATACCT 473567 >seq4073 Length=488838 Score = 118 bits (130), Expect = 1e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| |||||||||||||| || || | | ||||||||||| ||||| Sbjct 173031 GTGGACTCTTTCTGAATGTTATAATCTGCCAGAGTTCGCCCATCTTCGAGCTGCTTACCG 173090 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||||| | ||||| |||||||| || ||||| ||||| ||| | || | ||| Sbjct 173091 GCGAAGATCAACCTCTGCTGGTCGGGAGGAATACCTTCCTTGTC-CTGAATCTTCGCTTT 173149 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | ||| ||||| | || | |||||||||||||| || Sbjct 173150 GACGTTGTCGATGGTGTCCGAGCTCTCGACCTCCAGAGTGATGGTCTTGCCGGTCAATGT 173209 Query 139747 TTTTACGAATATTTGCATAGCT 139768 ||| ||||| ||||||||| || Sbjct 173210 TTTCACGAAGATTTGCATACCT 173231 Score = 109 bits (120), Expect = 5e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| |||||||||||||| | || | | |||||||| || ||||| Sbjct 172803 GTGGACTCTTTCTGAATGTTATAATCTGCAAGAGTTCGCCCATCTTCGAGTTGCTTACCG 172862 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||||| | |||||||||||||| || ||||| ||||| ||| | || | ||| Sbjct 172863 GCGAAGATCAACCTCTGCTGATCGGGAGGAATACCTTCCTTGTC-CTGAATCTTCGCTTT 172921 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | ||| ||||| | || | ||||||||||||| || Sbjct 172922 GACGTTGTCGATGGTGTCCGAGCTCTCGACCTCCAGAGTGATGGTCTTGCCGGTCAGTGT 172981 Query 139747 TTTTACGAATATTTGCATAGCT 139768 ||| ||||| ||||||||| || Sbjct 172982 TTTCACGAAGATTTGCATACCT 173003 Score = 102 bits (112), Expect = 8e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || || ||||| || || || | | ||||||||||| ||||| Sbjct 173259 GTAGACTCTTTCTGTATATTATAGTCTGCCAGAGTTCGCCCATCTTCGAGCTGCTTACCG 173318 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| | |||||||| ||||| || ||||||||||| |||||| || Sbjct 173319 GCGAAGATCAACCTCTGCTGATCAGGAGGGATTCCTTCTTTGTCCTGGATTTTCGCCTTG 173378 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | |||||||| | || | |||||||| ||||| || Sbjct 173379 ACGTTGTCGATCGTGTCGGAGCTTTCCACCTCTAAAGTAATGGTCTTGCCAGTCAAGGTC 173438 Query 139748 TTTACGAATATTTGCATAGCT 139768 || || || || |||||| || Sbjct 173439 TTGACAAAAATCTGCATACCT 173459 >seq487 Length=466406 Score = 113 bits (124), Expect = 4e-20 Identities = 120/156 (77%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||||||||| |||||||| |||||| | ||||||||| ||||| ||||| || ||| Sbjct 182936 TCTTCGAGCTGCTTACCAGCGAAGATCAATCTTTGCTGATCAGGAGGAATGCCCTCCTTG 182877 Query 139670 TCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | |||| | | || | ||||||| | |||||| || | || | Sbjct 182876 TC-CTGAATCTTAGCTTTAACGTTGTCGATAGTGTCGGAGCTCTCCACTTCCAGAGTGAT 182818 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| |||||||||| |||||||||||| || ||||| Sbjct 182817 CGTTTTGCCGGTCAGCGTTTTTACGAAGATCTGCAT 182782 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | |||||| || | || | ||| ||||||||||||||||| |||||| | Sbjct 183559 CCTCCTCGCAGACGCAACACCAGATGCAACGTCGACTCTTTTTGAATGTTGTAATCGGCC 183500 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| ||||| || ||||| |||||| || ||||| |||||||| Sbjct 183499 AGTGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCGGGAGGA 183440 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| |||||| ||| | | || | ||||| | | |||||| Sbjct 183439 ATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTGTCGATGGTGTCAGAGCTCTCCACT 183380 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || |||| || || ||||| |||||||| Sbjct 183379 TCCAGAGTGATGGTTTTCCCCGTCAGAGTCTTGACGAAGATTTGCAT 183333 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | || || || | || ||||| ||||| ||||| || || Sbjct 182780 CCTCCTCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCG 182721 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||||||||| |||||||| ||||||| | ||||| || || || Sbjct 182720 AGAGTGCGGCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGA 182661 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||||||| || | | ||||| ||||||| | |||||| Sbjct 182660 ATCCCTTCCTTGTCCTGGATTTTTGCCTTCACGTTGTCCACGGTGTCGGAGCTTTCCACC 182601 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | |||||| || || | || || ||||| ||||||||| || Sbjct 182600 TCGAGAGTGATCGTCTTTCCTGTGAGGGTCTTCACGAAGATTTGCATACCT 182550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||||||||| || ||||| ||||||| | ||||| || || || || ||||| ||| Sbjct 177418 TCTTCGAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATCCCTTCCTTG 177359 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | || | || || | | || ||||||| || | Sbjct 177358 TC-CTGAATCTTAGCTTTCACATTATCGATCGTATCCGAGCTTTCTACCTCAAGAGTGAT 177300 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||| || ||||| ||||| ||||| ||||||||| || Sbjct 177299 CGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCATACCT 177260 >seq2625 Length=346021 Score = 111 bits (122), Expect = 2e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| || || | ||||| || ||||| ||||| || ||| || || ||| || Sbjct 281775 CAAAACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGCCAACGTCCTCCCATC 281716 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || || || || || ||| | |||| | |||||||| ||||| |||||||| ||||| Sbjct 281715 CTCAAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTC 281656 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || ||||| | | || | ||||| | | ||||||||||| || | | Sbjct 281655 C-TGAATCTTCGTTTTCACGTTATCAATCGTGTCAGAGCTCTCCACCTCAAGAGTTATGG 281597 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||||||| | ||||| ||||| ||||||||| || Sbjct 281596 TCTTGCCGGTGAGGGTTTTAACGAAGATTTGCATACCT 281559 Score = 102 bits (112), Expect = 8e-17 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || || || | |||||||| ||||||||||| || ||| || || | ||| Sbjct 282003 CAAGACCAAATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCCAAGGTACGACCGTC 281944 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || || || || || ||| | |||| | |||||||| ||||| |||||||| ||||| Sbjct 281943 CTCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTC 281884 Query 139672 GGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || ||||| | | || | ||||| | | ||||||||||| || | | Sbjct 281883 -CTGAATCTTCGTTTTCACGTTGTCAATCGTGTCAGAGCTCTCCACCTCAAGAGTGATGG 281825 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| |||||||| || || || || || |||||| Sbjct 281824 TCTTACCGGTCAATGTCTTCACAAAAATCTGCATA 281790 >seq3072 Length=975934 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || || || | ||||| || ||||| ||||| || ||| || || ||| || Sbjct 271567 CAACACCAAATGGAGGGTAGATTCGTTTTGGATGTTGTAGTCGGCCAACGTCCTCCCATC 271508 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || || || || || ||| | |||| | |||||||| ||||| |||||||| ||||| Sbjct 271507 CTCAAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTC 271448 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || ||||| | | || | ||||| | | ||||||||||| || | | Sbjct 271447 C-TGAATCTTCGTTTTCACGTTGTCAATCGTGTCAGAGCTCTCCACCTCAAGAGTTATGG 271389 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| || | | ||| ||||| |||||||| Sbjct 271388 TCTTGCCCGTGAGGGCTTTAACGAAGATTTGCAT 271355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496038347290400