Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2625 122 9e-23 seq4073 111 2e-19 seq487 104 2e-17 seq4017 96.9 4e-15 >seq2625 Length=346021 Score = 122 bits (134), Expect = 9e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| ||||| | |||||||| ||||| |||||||| ||| || || ||| || Sbjct 281775 CAAAACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGCCAACGTCCTCCCATC 281716 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 || ||||| || || ||| | |||| | |||||||| ||||| |||||||| ||||| Sbjct 281715 CTCAAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTC 281656 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||| || ||| | | || | |||||| | | || || |||| ||| | || Sbjct 281655 CTGAATCTTCGTTTTCACGTTATCAATCGTGTCAGAGCTCTCCACCTCAAGAGTTATGGT 281596 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||||||||| | ||||| ||||| ||||||||| || Sbjct 281595 CTTGCCGGTGAGGGTTTTAACGAAGATTTGCATACCT 281559 Score = 102 bits (112), Expect = 8e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || ||||| | ||||| || ||||| |||||||| ||| || || | ||| Sbjct 282003 CAAGACCAAATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCCAAGGTACGACCGTC 281944 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 || ||||| || || ||| | |||| | |||||||| ||||| |||||||| ||||| Sbjct 281943 CTCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTC 281884 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||| || ||| | | || | |||||| | | || || |||| ||| | || Sbjct 281883 CTGAATCTTCGTTTTCACGTTGTCAATCGTGTCAGAGCTCTCCACCTCAAGAGTGATGGT 281824 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| ||||||||||| || || || || |||||| Sbjct 281823 CTTACCGGTCAATGTCTTCACAAAAATCTGCATA 281790 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | | || || ||||| | |||||||| ||||| |||||||||||| Sbjct 281561 CCTCCTCTCAGCCTCAGGACCAAATGCAAGGTAGATTCCTTTTGGATGTTGTAATCGGCG 281502 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| || ||||| || ||| | |||| | ||||| || ||||| Sbjct 281501 AGTGTCCGACCATCTTCAAGCTGTTTCCCGGCAAAAATCAATCTCTGCTGGTCTGGAGGA 281442 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| ||| | | || | ||||| | || || Sbjct 281441 ATTCCCTCCTTGTCTTGAATTTTGGTTTTCACATTGTCAATGGTGTCGGAACTCTCAACC 281382 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | ||||||||| ||||| ||||| ||||| || |||||| || Sbjct 281381 TCCAAAGTAATCGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCATACCT 281331 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | | ||| || | ||| | || || |||||||| |||||||| ||| | Sbjct 280421 CCTCCTCGCAGCCTCAACACAAGATGCAAAGTGGACTCTTTTTGGATGTTGTAGTCGGCC 280362 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||||||||||||||| || | |||| || ||||| || || || Sbjct 280361 AGCGTGCGACCGTCTTCGAGTTGTTTACCGGCGAAAATCAACCGCTGCTGGTCAGGGGGA 280302 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || || || |||||| || | | || | ||| || | | ||| || Sbjct 280301 ATGCCCTCCTTATCTTGAATTTTCGTCTTCACATTGTCGATCGTATCAGAGCTTTCGACC 280242 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || || | || || ||||| || ||||| Sbjct 280241 TCAAGAGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 280195 >seq4073 Length=488838 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | || | ||| | || || ||||| || ||||| ||||| Sbjct 172773 CCTCCTCTAAGACGGAGGACAAGATGCAGGGTGGACTCTTTCTGAATGTTATAATCTGCA 172832 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||||||||||| ||||| || |||||| | |||||||||||||| Sbjct 172833 AGAGTTCGCCCATCTTCGAGTTGCTTACCGGCGAAGATCAACCTCTGCTGATCGGGAGGA 172892 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || ||| | | || | ||||||| | || || Sbjct 172893 ATACCTTCCTTGTCCTGAATCTTCGCTTTGACGTTGTCGATGGTGTCCGAGCTCTCGACC 172952 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | ||||||||||||| |||||| ||||| ||||||||| || Sbjct 172953 TCCAGAGTGATGGTCTTGCCGGTCAGTGTTTTCACGAAGATTTGCATACCT 173003 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | || | ||| | || || ||||| || ||||| ||||| | Sbjct 173001 CCTCCTCTGAGACGGAGGACAAGATGCAGGGTGGACTCTTTCTGAATGTTATAATCTGCC 173060 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | |||||||| || ||||| || |||||| | ||||| |||||||| Sbjct 173061 AGAGTTCGCCCATCTTCGAGCTGCTTACCGGCGAAGATCAACCTCTGCTGGTCGGGAGGA 173120 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || ||| | | || | ||||||| | || || Sbjct 173121 ATACCTTCCTTGTCCTGAATCTTCGCTTTGACGTTGTCGATGGTGTCCGAGCTCTCGACC 173180 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | |||||||||||||||||||| ||||| ||||||||| || Sbjct 173181 TCCAGAGTGATGGTCTTGCCGGTCAATGTTTTCACGAAGATTTGCATACCT 173231 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | | |||||| ||||||| || ||||| ||||| ||||||||||| | Sbjct 173457 CCTCCTCTGAGCCTCAAAACCAAATGAAGCGTCGATTCCTTTTGGATGTTGTAATCCGCC 173516 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || ||||| || || || ||| ||||||| | ||||| || ||||| Sbjct 173517 AGAGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 173576 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| || | | || | |||||| | | || || Sbjct 173577 ATCCCCTCCTTGTCCTGAATTTTGACCTTCACATTGTCGATCGTGTCAGAGCTCTCGACC 173636 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || ||||| || || ||||| || ||||| Sbjct 173637 TCCAACGTGATGGTCTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 173683 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | || | ||| | ||||| ||||| ||||| || || || | Sbjct 173229 CCTCCTCTGAGACGGAGCACAAGATGCAGGGTAGACTCTTTCTGTATATTATAGTCTGCC 173288 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | |||||||| || ||||| || |||||| | |||||||| ||||| Sbjct 173289 AGAGTTCGCCCATCTTCGAGCTGCTTACCGGCGAAGATCAACCTCTGCTGATCAGGAGGG 173348 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| || | | || | |||||| | | ||| || Sbjct 173349 ATTCCTTCTTTGTCCTGGATTTTCGCCTTGACGTTGTCGATCGTGTCGGAGCTTTCCACC 173408 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | |||||||| ||||| || || || || || |||||| || Sbjct 173409 TCTAAAGTAATGGTCTTGCCAGTCAAGGTCTTGACAAAAATCTGCATACCT 173459 >seq487 Length=466406 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | |||||| || | ||| | || || |||||||| |||||||||||| | Sbjct 183559 CCTCCTCGCAGACGCAACACCAGATGCAACGTCGACTCTTTTTGAATGTTGTAATCGGCC 183500 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| || || || ||||| |||||| || ||||| |||||||| Sbjct 183499 AGTGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCGGGAGGA 183440 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| ||||| ||| | | || | ||||| | | || ||| Sbjct 183439 ATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTGTCGATGGTGTCAGAGCTCTCCACT 183380 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || |||| || || ||||| |||||||| Sbjct 183379 TCCAGAGTGATGGTTTTCCCCGTCAGAGTCTTGACGAAGATTTGCAT 183333 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | | ||| | || ||||| | || || || ||||| |||||||| || Sbjct 183008 CCTCCCCTGAGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCG 182949 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||||| || |||||||| |||||| | ||||||||| ||||| Sbjct 182948 AGGGTACGACCATCTTCGAGCTGCTTACCAGCGAAGATCAATCTTTGCTGATCAGGAGGA 182889 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| ||| || ||| | | || | ||||| | | || ||| Sbjct 182888 ATGCCCTCCTTGTCCTGAATCTTAGCTTTAACGTTGTCGATAGTGTCGGAGCTCTCCACT 182829 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||| |||||||||| ||||||||||| || ||||| Sbjct 182828 TCCAGAGTGATCGTTTTGCCGGTCAGCGTTTTTACGAAGATCTGCAT 182782 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | | ||| | || ||||| | ||||| || || || |||||||| || Sbjct 177719 GCCTCCCCTCAGACGAAGCACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGC 177660 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| |||||||| || || ||||| ||||||| | ||||| || || || Sbjct 177659 GAGGGTGCGGCCATCTTCGAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGG 177600 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| || || | | || | ||| |||| | |||||| Sbjct 177599 AATTCCTTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATCGTATCCGAGCTTTCTAC 177540 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | ||||||||||||| || || ||||| ||||||||| || Sbjct 177539 CTCCAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCATACCT 177488 >seq4017 Length=874442 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | | || ||| | ||| | || ||||||||||| || |||||||| | Sbjct 473797 CCACCTCGCAGCCTCAGAACAAGATGCAGAGTTGATTCTTTTTGGATATTGTAATCCGCC 473738 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| || || || || ||| |||||| | |||||||||||||| Sbjct 473737 AGGGTTCGTCCA-TCTTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCGGGAGG 473679 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || ||| | | || | ||||| | | ||| || Sbjct 473678 AATTCCTTCCTTGTCCTGGATCTTGGTTTTGACATTGTCGATGGTGTCAGAGCTTTCGAC 473619 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | ||||| |||||||| || || ||||| || |||||| || Sbjct 473618 CTCGAGAGTGATAGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCATACCT 473567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506988181017840