Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq594 86.0 9e-12 >seq594 Length=317990 Score = 86.0 bits (94), Expect = 9e-12 Identities = 174/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 96895 CAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGA 96954 |||| ||| | ||| | ||| | || ||||||||||| || | ||||||||| | || Sbjct 156445 CAGGTGCTTTCGCCATTTACCTCGAGCCTTGGCACGCCGATATCTTTGACTTTCTGGACC 156386 Query 96955 TGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGG 97014 | | || || || |||||| | || || |||||||||||||||| || |||| Sbjct 156385 TAAGAAAGAATCACGGAAAGGAAGAGTCTCGCGCAAGGGACTTGTTTTATGGCCTTTGGG 156326 Query 97015 TGCCAGATTTGTTCATGAAGCGCGT-CAA-CGACGGTGGCTACTGGAGCCTAATGTGCCC 97072 | || ||| | ||||||||| | || ||| || | || |||| || | ||||| Sbjct 156325 TTCCTGATCTTTTCATGAAGAGGGTGCAATCG--GACGGAACCTGGTCGCTGTTCTGCCC 156268 Query 97073 CGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG-TTTGAGGCCAAGTACACGG 97131 | || | || || || | ||||||||||| | |||| ||||||| |||||| Sbjct 156267 CAACGAAGCGCCTGGGCTTGCAGATTGCTGGGGAG-AGAGTTTTGAGGAGCTGTACACCA 156209 Query 97132 CCTACGAGCAAG 97143 ||||||| ||| Sbjct 156208 GCTACGAGAAAG 156197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741020877976120