Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4017 141 7e-29 seq2625 131 1e-25 seq487 98.7 7e-16 seq4073 91.5 1e-13 >seq4017 Length=874442 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | || || | |||||| || || || ||||| ||||| || ||| Sbjct 473341 CCACCTCTCAACCGCAACACAAGATGAAGAGTAGACTCCTTTTGGATGTTATAGTCGGCC 473282 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | || | ||||| | ||||| |||||| | ||||| || || ||||| ||| Sbjct 473281 AAAGTCCTGCCATCTTCGAGCTGTTTCCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGA 473222 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||||||| |||| ||| | || ||||| ||| | | || || Sbjct 473221 ATGCCTTCCTTGTCTTGAATTTTGGTCTTCACATTGTCGATGGTGTCGGAACTCTCCACC 473162 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| || ||||||||||| || || ||||| |||||| Sbjct 473161 TCCAAGGTGATGGTCTTGCCTGTCAGAGTCTTCACGAAAATCTGCATA 473114 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| || || || | || ||||| || || ||||| |||||||| ||| Sbjct 472657 CCACCTCTCAACCTCAACACGAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCC 472598 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| |||| || | ||||| || ||| | |||||||| || ||||| ||| Sbjct 472597 AGAGTTCTACCGTCCTCAAGCTGTTTACCTGCGAAGATCAAACGCTGCTGGTCTGGGGGA 472538 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || || || |||| ||| | || ||||| ||| | | || || Sbjct 472537 ATACCCTCCTTATCTTGGATCTTAGTCTTCACATTATCGATGGTGTCGGAACTCTCAACC 472478 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||||| || ||||||| || || || || ||||||||| Sbjct 472477 TCGAGAGTAATGGTCTTTCCTGTCAACGTCTTGACGAAGATTTGCATA 472430 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| ||| | ||| | ||||||||||| || ||||| ||||||||||| Sbjct 472429 CCTCCTCTCAGTCTCAGAACCAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCC 472370 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | || || | || ||||| || | |||| ||| || ||||| ||| Sbjct 472369 AGCGTCCTTCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 472310 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || |||||| |||||||| | || ||||| || | || || Sbjct 472309 ATACCCTCCTTATCTTGAATTTTAGTCTTTACATTGTCGATGGTGTCAGAGCTCTCCACC 472250 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||| || ||||| |||| ||| || || || || |||||| Sbjct 472249 TCGAGGGTAATTGTCTTACCCGTCAAAGTCTTGACGAAGATCTGCATA 472202 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| || | || | |||||||||||| || ||||| |||||||| ||| Sbjct 472885 CCTCCTCTCAGCCTCAGTACGAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCA 472826 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | ||| |||| || | || ||||| ||| | || | || || ||||| || Sbjct 472825 AGGGTCCTCCCGTCCTCAAGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTCTGGAGGG 472766 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| |||||| |||| ||| | || ||||| ||| | | || || Sbjct 472765 ATACCCTCCTTGTCTTGGATTTTGGTCTTCACATTGTCGATGGTGTCGGAACTCTCCACC 472706 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| || || |||| || || || || || |||||| Sbjct 472705 TCCAAGGTGATGGTCTTGCCAGTCAATGTCTTCACGAAGATCTGCATA 472658 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| || | || | |||||||| || || ||||| |||||||| ||| Sbjct 473113 CCACCTCTCAACCTCAGGACGAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGCC 473054 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | ||||| | || ||||| ||| | ||||| || || || || ||| Sbjct 473053 AGGGTCCTTCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCTGGAGGA 472994 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || ||||| |||| ||| | || || || || | | || || Sbjct 472993 ATACCCTCCTTATCTTGGATTTTAGTCTTCACATTGTCGATAGTGTCAGAACTCTCCACC 472934 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || ||||||||||| || || ||||| |||||| Sbjct 472933 TCCAAGGTTATAGTCTTGCCTGTCAGAGTCTTCACGAAAATCTGCATA 472886 >seq2625 Length=346021 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || |||||||| | ||| | |||||| ||||| ||||| || |||||||| ||| Sbjct 280651 TGCCTCCCCTCAATCTCAGAACAAGATGAAGCGTGGACTCTTTCTGAATGTTGTAGTCGG 280592 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | |||| |||| ||||||||| ||| | ||||| | || || || | Sbjct 280591 CCAGCGTCCGGCCGTCCTCTAGTTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGG 280532 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | ||||| || || || || || |||| ||| | || ||||| || | | || | Sbjct 280531 GGATTCCCTCCTTATCCTGGATCTTAGTCTTGACATTGTCGATGGTGTCAGAACTCTCGA 280472 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | |||||||||||| || ||||||||||| || |||||||||||| Sbjct 280471 CCTCGAGGGTAATGGTTTTCCCCGTCAGAGTTTTAACGAAAATTTGCATA 280422 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| || | || ||||| | ||| || || ||||| |||||||||||| Sbjct 281561 CCTCCTCTCAGCCTCAGGACCAAATGCAAGGTAGATTCCTTTTGGATGTTGTAATCGGCG 281502 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||||| || || | ||||| | || ||||| ||| Sbjct 281501 AGTGTCCGACCATCTTCAAGCTGTTTCCCGGCAAAAATCAATCTCTGCTGGTCTGGAGGA 281442 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| ||||||| | || ||| | || ||||| ||| | | || || Sbjct 281441 ATTCCCTCCTTGTCTTGAATTTTGGTTTTCACATTGTCAATGGTGTCGGAACTCTCAACC 281382 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || || |||| ||||| || ||||| |||||| Sbjct 281381 TCCAAAGTAATCGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCATA 281334 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || |||||||| || || | ||| || ||||| || ||||| |||||||| || Sbjct 281333 CCTCCCCTCAATCTCAACACCAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCC 281274 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| |||| || || || || || || | ||||| || || || || |||| Sbjct 281273 AGCGTTCGGCCGTCCTCCAACTGCTTACCGGCAAAAATCAACCGCTGCTGATCTGGTGGA 281214 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || || |||| || | || || |||||| |||| || Sbjct 281213 ATTCCTTCCTTATCTTGGATCTTAGTCTTCACGTTGTCGATAGTATCGGAGCTTTCAACC 281154 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| || || || ||||| ||||| || || ||||| |||||| Sbjct 281153 TCCAGGGTGATAGTCTTCCCTGTAAGAGTCTTGACGAAAATCTGCATA 281106 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || | || ||| | ||| ||||| || ||| || || || || ||||| ||| Sbjct 280193 CCTCCACGCAGTCTCAGAACCAAATGCAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCC 280134 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | || || | ||| ||||| ||| | ||||| || || ||||| || Sbjct 280133 AAACTGCGACCATCCTCGAGTTGCTTGCCGGCGAAAATCAACCGCTGCTGGTCAGGGGGG 280074 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| ||||||||||| || | || ||||||||| | | || || Sbjct 280073 ATGCCCTCCTTGTCCTGGATTTTGCTCTTGACGTTGTCGATGGTATCGGAACTCTCGACC 280014 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || || || || ||||||||||| || || || || ||||| || Sbjct 280013 TCCAAAGTGATCGTCTTCCCTGTCAGAGTCTTCACGAAGATCTGCATCTT 279964 >seq487 Length=466406 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || |||||||| |||||||||||| || | | | ||||| | || |||||| Sbjct 183529 GTCGACTCTTTTTGAATGTTGTAATCGGCCAGTGTACGACCATCTTCCAGCTGCTTGCCA 183470 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 ||| | ||||| || || |||||| |||||||| || ||||| |||||| || Sbjct 183469 GCGAAGATCAATCGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCTTTC 183410 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 ||| | || ||||| || | || || || | || |||||||| || |||||||| Sbjct 183409 ACATTGTCGATGGTGTCAGAGCTCTCCACTTCCAGAGTGATGGTTTTCCCCGTCAGAGTC 183350 Query 15347 TTTACAAAAATTTGCAT 15363 || || || |||||||| Sbjct 183349 TTGACGAAGATTTGCAT 183333 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | | || || ||||||||||| || || || ||||||||||| Sbjct 182324 CCTCCCCTCAACCGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCTGCA 182265 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | || || ||||| | ||||| | || ||||| || Sbjct 182264 AGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGG 182205 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || || || ||| ||| ||| ||| | || ||||||||||| | || || Sbjct 182204 ATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTGTCGATGGTATCGCTGCTCTCGACC 182145 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || ||||| || || ||||| || ||||| || Sbjct 182144 TCGAGCGTGATGGTCTTTCCCGTCAGCGTCTTCACAAAGATCTGCATGTT 182095 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || ||||| || ||||| ||||| || || ||| ||| | ||||| Sbjct 177244 ACCAAATGGAGAGTGGACTCCTTTTGGATGTTATAGTCCGCGAGAGTTCGGCCATCTTCG 177185 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| ||| | |||| | || ||||| ||||||||||||||||| | Sbjct 177184 AGCTGCTTGCCGGCGAAGATCAGTCTCTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGA 177125 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||| ||| |||| || || | ||||| || ||| Sbjct 177124 ATCTTAGCCTTGACATTATCGATGGTGTCGGAGCTTTCCACCTCCAGAGTAATTGTCTTA 177065 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || || |||||| Sbjct 177064 CCCGTGAGGGTCTTCACGAAGATCTGCATA 177035 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || || || || |||||||| || || | | | ||||| Sbjct 177700 ACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGGCCATCTTCG 177641 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | |||| | || ||||| ||||||||||| ||||| | Sbjct 177640 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGA 177581 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || || ||||| ||||||| || | || ||||| || Sbjct 177580 ATCTTGGCCTTCACATTATCGATCGTATCCGAGCTTTCTACCTCCAGAGTGATGGTCTTG 177521 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || || || ||||||||| Sbjct 177520 CCGGTCAGAGTCTTGACGAAGATTTGCATA 177491 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | || ||||||||| | |||| | || ||||| |||||||||||| ||| Sbjct 183164 TCTTCGAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGAATTCCTTCCTTG 183105 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||| ||| ||| ||| | || || || || |||| || || | || ||| Sbjct 183104 TCCTGAATCTTGGCCTTCACATTATCGATCGTGTCCGAGCTTTCCACCTCCAGAGTGATG 183045 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||||||||| || || ||||||||| Sbjct 183044 GTCTTTCCGGTCAGAGTTTTGACGAAGATTTGCATA 183009 >seq4073 Length=488838 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| ||||| || ||||| ||||| || || || ||| ||| | | ||||| | || Sbjct 173252 ATGCAGGGTAGACTCTTTCTGTATATTATAGTCTGCCAGAGTTCGCCCATCTTCGAGCTG 173311 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | ||||| | || || || || |||||||||||||| ||||| Sbjct 173312 CTTACCGGCGAAGATCAACCTCTGCTGATCAGGAGGGATTCCTTCTTTGTCCTGGATTTT 173371 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || | || || || ||| |||| || ||||| |||||||| || || || Sbjct 173372 CGCCTTGACGTTGTCGATCGTGTCGGAGCTTTCCACCTCTAAAGTAATGGTCTTGCCAGT 173431 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||||||| |||||| Sbjct 173432 CAAGGTCTTGACAAAAATCTGCATA 173456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362160939037917