Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2625 98.7 8e-16 seq3072 93.3 4e-14 seq487 87.8 2e-12 >seq2625 Length=346021 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| | ||||| |||||||| | |||||||| ||||| |||||||||||| | Sbjct 281561 CCTCCTCTCAGCCTCAGGACCAAATGCAAGGTAGATTCCTTTTGGATGTTGTAATCGGCG 281502 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | |||||| | ||||| || ||| |||| | ||||| || || || Sbjct 281501 AGTGTCCGACCATCTTCAAGCTGTTTCCCGGCAAAAATCAATCTCTGCTGGTCTGGAGGA 281442 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || || ||||| |||||| |||||| | | ||| | ||| | || Sbjct 281441 ATTCCCTCCTTGTCTTGAATTTTGGTTTTCACATTGTCAATGGTGTCGGAACTCTCAACC 281382 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| || ||||| ||||| |||||||| ||||| ||||| Sbjct 281381 TCCAAAGTAATCGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 281335 >seq3072 Length=975934 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| | ||||||||||||||| || |||||||| ||||| |||||||| ||| || Sbjct 271581 CCACCTCTCAGCCTCAACACCAAATGGAGGGTAGATTCGTTTTGGATGTTGTAGTCGGCC 271522 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | ||| || | ||| || || ||| |||| | |||||| ||||| || Sbjct 271521 AACGTCCTCCCATCCTCAAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGAGGG 271462 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | |||||| ||||| ||| || |||||| | | ||| | || || | ||| Sbjct 271461 ATGCCTTCCTTGTCCTGAATCTTCGTTTTCACGTTGTCAATCGTGTC-AGAGCTCTCCAC 271403 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || ||||| ||||| || | | ||| || || |||||||| Sbjct 271402 CTCAAGAGTTATGGTCTTGCCCGTGAGGGCTTTAACGAAGATTTGCAT 271355 >seq487 Length=466406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 19979 TTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 ||||||||||| | | |||||||| ||| | || || |||||||| |||||||||||| Sbjct 183562 TTTCCTCCTCGCAGACGCAACACCAGATGCAACGTCGACTCTTTTTGAATGTTGTAATCG 183503 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 ||| || | |||||||| || ||||| || | || | | ||| || ||| Sbjct 183502 GCCAGTGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCGGGA 183443 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TC 20157 || | || || ||||| ||||| |||||| | | | | | || || | || Sbjct 183442 GGAATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTGTCGATGGTGTC-AGAGCTCTC 183384 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 | ||||| || |||||||| || |||| || ||||| || ||||||||| Sbjct 183383 CACTTCCAGAGTGATGGTTTTCCCCGTCAGAGTCTTGACGAAGATTTGCATT 183332 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| | |||| | |||||| || || || || || ||||| |||||||| || | Sbjct 176350 CCTCCCCTCAACCGAAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAGTCCGCG 176291 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| ||||||||||| ||||| || |||| |||||||| || || ||| Sbjct 176290 AGAGTTCGGCCGTCTTCCAATTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGA 176231 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | || || ||||| ||| || |||||| | | | | | ||| || | ||| Sbjct 176230 ATTCCCTCCTTGTCCTGAATCTTAGCTTTCACGTTGTCGATGGTGTCG-GAGCTCTCCAC 176172 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| ||||| |||||||||| || ||||| || || ||||| Sbjct 176171 CTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 176124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419566044544497