Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq470 86.0 4e-12 >seq470 Length=504015 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 25499 AACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAA 25558 ||||| ||| |||||||| |||||||| ||||| ||| ||||| ||||||| || || Sbjct 117214 AACGTGAGCAATCATGTAGGTGAGGAGGGAGTAGGAGGCTATGTTGTAGGGTACTCCTAA 117155 Query 25559 CCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAA 25618 ||||| || | || | ||||| | ||||| || |||||| ||| | |||||||| Sbjct 117154 TCCCATATCACAT-GAGCGTTGGTACATTTGACATGATAGCTCTCCGTTGGCCACGTAAA 117096 Query 25619 ACTG 25622 |||| Sbjct 117095 ACTG 117092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340120450368501