Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq487 114 1e-20 seq2625 104 2e-17 seq4017 95.1 1e-14 seq4073 82.4 6e-11 >seq487 Length=466406 Score = 114 bits (126), Expect = 1e-20 Identities = 168/233 (72%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | ||||| | ||| |||||||| ||| ||||||||| |||||||| || || Sbjct 176807 ACCTCCCCTCAACCGAAGCACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCTGC 176748 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | ||| ||||||| |||||||||||| | | || | | |||||| || || Sbjct 176747 AAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCTGGAGG 176688 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACT 48674 | | ||||||||| |||||| ||| | |||| | |||||||||| || | Sbjct 176687 AATTCCCTCCTTGTCCTGAATTTT-GGCT---TTGACGTTATCAATGGTATCGG-AGCTT 176633 Query 48675 CCGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | | || | || || || ||||||||||| |||||||||||||||||||| Sbjct 176632 TCTACTTCTAAAGTGATAGTCTTACCGGTGAGTGTTTTCACAAAAATCTGCAT 176580 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||||| | ||| || ||||| ||| |||||| || ||||||||||| | | Sbjct 182324 CCTCCCCTCAACCGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCTG-C 182266 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || |||| || |||||||| || | | || || | |||||| || || Sbjct 182265 AAGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGGGG 182206 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||| ||| ||| || ||| | | | ||||||||| | ||| Sbjct 182205 GATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTGTCGATGGTATCGCTGCTCTCGAC 182146 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || || || || || |||||||| |||||||| Sbjct 182145 CTCGAGCGTGATGGTCTTTCCCGTCAGCGTCTTCACAAAGATCTGCAT 182098 >seq2625 Length=346021 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| |||| || | || ||||| || ||||||||||| || || ||||| || ||| Sbjct 280193 CCTCCACGCAGTCTCAGAACCAAATGCAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCC 280134 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| || ||||| ||| || |||| || |||||||| || || Sbjct 280133 AAACTGCGACCATCCTCGAGTTGCTTGCCGGCGAAAATCAACCGCTGCTGGTCAGGGGGG 280074 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||||||||| ||||| ||||| | | || |||||||||| | ||| Sbjct 280073 ATGCCCTCCTTGTCCTGGATTTTGCTCTTGACGTTGTCG--ATGGTATCGGAACTCTCGA 280016 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || || || || || || ||||| ||||| || ||||||||| Sbjct 280015 CCTCCAAAGTGATCGTCTTCCCTGTCAGAGTCTTCACGAAGATCTGCATC 279966 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | ||| || ||||| | ||| || ||| ||||||||| |||||||| ||||| Sbjct 281334 ACCTCCCCTCAATCTCAACACCAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGC 281275 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| ||||||||| |||||||||| | |||| || ||||||||||| || Sbjct 281274 CAGCGTTCGGCCGTCCTCCAACTGCTTACCGGCAAAAATCAACCGCTGCTGATCTGGTGG 281215 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | |||||| || || || ||| | | | || || ||||||| || Sbjct 281214 AATTCCTTCCTTATCTTGGATCTTAGTCTTCACGTTGTCG--ATAGTATCGGAGCTTTCA 281157 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || || || ||||| || || ||||||||||| Sbjct 281156 ACCTCCAGGGTGATAGTCTTCCCTGTAAGAGTCTTGACGAAAATCTGCAT 281107 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| || || ||||| || || |||||||||||||||||| || ||| Sbjct 282017 CCTCCCCTCAGCCTCAAGACCAAATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCC 281958 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || ||||||| || ||||| || | |||| || | ||||||||| || Sbjct 281957 AAGGTACGACCGTCCTCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGG 281898 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||||| ||| ||| || | | || || || | |||| | Sbjct 281897 ATGCCTTCCTTGTCCTGAATCTTCGTTTTCACGTTGTCAATCGTGTCAGAGCTCTCCACC 281838 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| |||||||| | || ||||||||||||||||| Sbjct 281837 TCAAGAGTGATGGTCTTACCGGTCAATGTCTTCACAAAAATCTGCAT 281791 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| || | || | |||||| ||| ||| || ||||||||||| || ||| Sbjct 280649 CCTCCCCTCAATCTCAGAACAAGATGAAGCGTGGACTCTTTCTGAATGTTGTAGTCGGCC 280590 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||| || || || ||| || | || || | ||||||||| || Sbjct 280589 AGCGTCCGGCCGTCCTCTAGTTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGG 280530 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||| ||| || || ||||| | | ||||| || | | ||| | Sbjct 280529 ATTCCCTCCTTATCCTGGATCTTAGTCTTGACATTGTCGATGGTGTCAGAACTCTCGACC 280470 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || |||||||| || || |||||||| || ||||| ||||| Sbjct 280469 TCGAGGGTAATGGTTTTCCCCGTCAGAGTTTTAACGAAAATTTGCAT 280423 >seq4017 Length=874442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||||| ||||| | |||||| || ||||||||| ||||| || || || Sbjct 473342 ACCACCTCTCAACCGCAACACAAGATGAAGAGTAGACTCCTTTTGGATGTTATAGTCGGC 473283 Query 48559 CAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616 ||| ||| || | || || ||||| || || || | || || |||||||| || Sbjct 473282 CAAA-GTC-CTGCCATCTTCGAGCTGTTTCCCAGCGAAGATCAATCGCTGCTGGTCTGGG 473225 Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCC 48676 || | | ||||||||| |||||| ||| | | | ||||| |||| | |||| Sbjct 473224 GGAATGCCTTCCTTGTCTTGAATTTTGGTCTTCACATTGTCGATGGTGTCGGAACTCTCC 473165 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || ||||| ||||| ||||||||||| Sbjct 473164 ACCTCCAAGGTGATGGTCTTGCCTGTCAGAGTCTTCACGAAAATCTGCAT 473115 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | || || || || || || | ||| ||||||||| ||||| |||||||| Sbjct 472202 ACCACCCCTCAGTCTCAAGACCAAGTGCAATGTAGACTCCTTTTGGATGTTATAATCAGC 472143 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| | | | ||||| || ||||| ||| || |||| | | |||||| || || Sbjct 472142 CAATGTCCTCCCATCCTCGAGTTGCTTGCCGGCGAAAATCAGCCTCTGCTGGTCGGGAGG 472083 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG- 48677 | || ||||||||| ||| || ||| | | | || ||||||| || | || Sbjct 472082 AATACCCTCCTTGTCCTGAATCTTGGTCTTAACATTGTCGATCGTATCGG-AGCTTTCGA 472024 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| || || || | || |||||||| ||||||||| || Sbjct 472023 CCTCAAGAGTGATGGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCATCTTG 471971 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTG 48582 ||||| ||| ||||||||| ||||||||||||||| | ||| | | ||||| ||||| Sbjct 472405 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCC-AGCGTCCTTCCATCCTCAAGCTG 472347 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | | || | ||||||||| || || | || ||||| || |||||| Sbjct 472346 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTTATCTTGAATTTT 472287 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | ||||| || | |||| ||||| || || || ||||| || Sbjct 472286 AGTCTTTACATTGTCGATGGTGTCAGAGCTCTCCACCTCGAGGGTAATTGTCTTACCCGT 472227 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | ||| || || || |||||||| Sbjct 472226 CAAAGTCTTGACGAAGATCTGCAT 472203 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | |||||| | || | ||||| || ||||||||| |||||||| || || Sbjct 473114 ACCACCTCTCAACCTCAGGACGAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGC 473055 Query 48559 CAATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || || || |||||||| ||| || | || || ||||||||||| | Sbjct 473054 CAGG-GTCCTTCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCTGGAG 472996 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || ||||| || ||||| ||| | | | || || || | | |||| Sbjct 472995 GAATACCCTCCTTATCTTGGATTTTAGTCTTCACATTGTCGATAGTGTCAGAACTCTCCA 472936 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| || || || || ||||| ||||| ||||||||||| Sbjct 472935 CCTCCAAGGTTATAGTCTTGCCTGTCAGAGTCTTCACGAAAATCTGCAT 472887 >seq4073 Length=488838 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| ||| || |||||||| ||||| |||| |||| | || || ||||| Sbjct 173024 ATGCAGGGTGGACTCTTTCTGAATGTTATAATCTGCCAGAGTTCGCCCATCTTCGAGCTG 173083 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| || | || || | |||||| || || | || |||||||||| ||| || Sbjct 173084 CTTACCGGCGAAGATCAACCTCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGAATCTT 173143 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 | |||| | | || ||||| || | ||| ||| | || ||||| || ||| Sbjct 173144 CGCTTTGACGTTGTCG--ATGGTGTCCGAGCTCTCGACCTCCAGAGTGATGGTCTTGCCG 173201 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 || | |||||||| || || ||||| Sbjct 173202 GTCAATGTTTTCACGAAGATTTGCAT 173227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421229960646137