Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3601 105 3e-18 seq1727 104 1e-17 seq3885 102 4e-17 seq554 102 4e-17 seq347 102 4e-17 seq273 102 4e-17 seq177 100 1e-16 seq83 100 1e-16 seq3598 96.9 2e-15 seq1071 96.9 2e-15 seq2506 91.5 8e-14 >seq3601 Length=22148 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||| | | |||||||| |||||||||||||||||||||||||||| ||||| Sbjct 16119 TTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 16178 Query 11515 CTGAGCTAATGGGCCGT 11531 ||||||||||||||||| Sbjct 16179 CTGAGCTAATGGGCCGT 16195 >seq1727 Length=439623 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||||| | | |||||||| |||||||||||||||||||||||||||| |||| Sbjct 158292 ATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCA 158233 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 158232 ACTGAGCTAATGGGCC 158217 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 131574 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 131515 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 131514 TGAGCTAATGGGCC 131501 >seq3885 Length=497522 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 267606 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 267665 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 267666 TGAGCTAATGGGCCG 267680 >seq554 Length=389978 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 206665 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 206606 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 206605 TGAGCTAATGGGCCG 206591 >seq347 Length=279782 Score = 102 bits (112), Expect = 4e-17 Identities = 83/100 (83%), Gaps = 6/100 (6%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 72200 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 72259 Query 11516 TGAGCTAATGGGCCGTCGACGATT-GTGATTTTTCATCTA 11554 |||||||||||||| ||||| || |||| |||| || Sbjct 72260 TGAGCTAATGGGCC-----CGATTGGTAATTTGTCATATA 72294 >seq273 Length=283822 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 200893 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 200952 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 200953 TGAGCTAATGGGCCG 200967 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 184845 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 184786 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 184785 TGAGCTAATAGGCC 184772 >seq177 Length=32155 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 4034 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4093 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 4094 TGAGCTAATGGGCC 4107 >seq83 Length=86948 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 18347 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 18288 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 18287 TGAGCTAATGGGCC 18274 >seq3598 Length=323913 Score = 96.9 bits (106), Expect = 2e-15 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508 || ||| |||||||| | | |||||||| |||||||||||||||||||||||||||| Sbjct 234703 ATAAAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCT 234644 Query 11509 RACCAACTGAGCTAATGGGCCG 11530 |||| |||||||||| ||||| Sbjct 234643 AACCAGCTGAGCTAATAGGCCG 234622 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 235318 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 235259 Query 11516 TGAGCTAATGGGCCGTC 11532 ||||||||| |||| || Sbjct 235258 TGAGCTAATAGGCCATC 235242 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 235146 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 235087 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 235086 TGAGCTAATAGGCC 235073 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 235826 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 235767 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 235766 TGAGCTAATAGGCC 235753 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 236012 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 235953 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 235952 TGAGCTAATAGGCCG 235938 >seq1071 Length=1035271 Score = 96.9 bits (106), Expect = 2e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 || |||||| | | |||||||| |||||||||||||||||||||||||||| ||||| Sbjct 994738 TTCGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 994797 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 994798 CTGAGCTAATGGGCC 994812 >seq2506 Length=500779 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 224603 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 224662 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 224663 TGAGCTAATAGGCC 224676 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261478015695412