Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3885 131 3e-26 seq3291 120 5e-23 seq2073 120 5e-23 seq2855 118 2e-22 >seq3885 Length=497522 Score = 131 bits (144), Expect = 3e-26 Identities = 175/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| | | | | ||| ||||||||||||| |||||||||||||| || | Sbjct 89047 CGCCAAGCGTCACAGGA-AGGTGTTCAGAGATAACATCCAGGGAATCACCAAGCCCGCCA 88989 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || | |||||||| | ||||| ||||| |||||| || ||| || | || || |||| Sbjct 88988 TCAGGCGTCTGGCCAGACGTGGAGGAGTGAAGCGTATCAGTGGGCTGATTTACGAGGAGA 88929 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| |||||||||| || ||| || |||| ||||| | || || | Sbjct 88928 CTCGCGGAGTTCTGAAGATCTTTCTGGAGAATGTGATCCGAGATGCGGTGACGTACACGG 88869 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| | || |||||||| || | |||||| | || || || ||||| | || | Sbjct 88868 AGCACGCGAGGCGCAAGACTGTGACTGCTATGGATGTGGTGTACGCGCTGAAAAGACAGG 88809 Query 16671 G 16671 | Sbjct 88808 G 88808 Score = 123 bits (136), Expect = 4e-24 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||| | | | | ||| ||||||||||||| |||||||||||||| || | Sbjct 86585 CGCCAAGCGTCATAGGA-AGGTGTTCAGAGATAACATCCAGGGAATCACCAAGCCCGCCA 86527 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || | |||||||| || || || ||||| |||||| || || || | || || |||| Sbjct 86526 TCAGGCGTCTGGCCCGACGAGGAGGAGTGAAGCGTATCAGCGGGCTGATTTACGAGGAGA 86467 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| |||||||||| || ||| || |||| ||||| | || || | Sbjct 86466 CTCGCGGAGTTCTGAAGATCTTTCTGGAGAATGTGATCCGAGATGCGGTGACGTACACGG 86407 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 ||||||| | || |||||||| || | ||||| | || || || |||| Sbjct 86406 AGCACGCGAGGCGCAAGACTGTGACTGCTATGGACGTGGTGTACGCGCTGAA 86355 >seq3291 Length=82469 Score = 120 bits (132), Expect = 5e-23 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 16453 TCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 ||||| ||||||||||||| || ||||||||||| || ||| | |||||||| || | | Sbjct 77163 TCTTCAGAGATAACATCCAGGGTATCACCAAGCCCGCCATCAGGCGTCTGGCCCGAAGAG 77104 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || ||||||||| || ||| || | || || || | ||| | ||| ||||||||| Sbjct 77103 GAGGTGTCAAGCGTATCAGCGGACTGATTTACGAGGAAACTCGCGGAGTTCTGAAGATCT 77044 Query 16572 TCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 | || ||| || |||| ||||| | || ||||||||||| | | ||||||| Sbjct 77043 TTCTGGAGAATGTGATCCGGGATGCCGTGACTTACACCGAGCACGCGAGGAGGAAGACTG 76984 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAA 16662 |||| | ||||| | || || || ||||| Sbjct 76983 TCACTGCGATGGACGTGGTGTACGCGTTGAA 76953 Score = 100 bits (110), Expect = 4e-17 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || || ||||| ||||| || ||| | ||||| || || | || || | Sbjct 74901 GAGATAACATTCAGGGGATCACGAAGCCCGCCATCAGGCGTCTAGCCCGAAGAGGAGGCG 74842 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 ||||||| || ||| || | || || |||| ||| | || |||||||||| || Sbjct 74841 TCAAGCGCATCAGCGGACTGATTTACGAGGAGACTCGCGGAGTGCTGAAGATCTTTCTGG 74782 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || |||| ||||| | || ||||||||||| | | ||||||||||| Sbjct 74781 AGAATGTGATCCGGGATGCCGTGACTTACACCGAGCACGCGAGGAGGAAGACTGTCACTG 74722 Query 16638 CCATGGATATCGTCTATGCATTGAA 16662 | ||||| | || || || ||||| Sbjct 74721 CGATGGACGTGGTTTACGCGTTGAA 74697 >seq2073 Length=328600 Score = 120 bits (132), Expect = 5e-23 Identities = 163/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | ||||| |||||||||| ||||||||||| ||||| || || Sbjct 58432 GCCAAGCGTCACAGGA-AGGTCTTCAGAGATAACATTCAAGGAATCACGAAGCCTGCCAT 58374 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| || || || | |||||||||| Sbjct 58373 CCGAAGGCTGGCGAGAAGAGGCGGTGTGAAGCGAATCAGCGGTCTGATTTATGAAGAGAC 58314 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||||||||||| ||| ||| |||| ||||||| || || || || Sbjct 58313 CCGAGGAGTGCTCAAGATCTTCCTGGAGAACGTGATCCGTGATGCTGTCACTTACACGGA 58254 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| ||| ||||||||||| | ||||| |||| || || Sbjct 58253 GCACGCCCGACGCAAGACTGTCACTGCTATGGACGTCGTGTACGC 58209 Score = 111 bits (122), Expect = 2e-20 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | ||||| | ||||||||||||||||| || ||||| || || Sbjct 55423 GCCAAGCGTCACAGGA-AGGTCTTCAGGGATAACATCCAAGGAATTACGAAGCCTGCCAT 55365 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || ||||| ||||| || || || | || ||||| | Sbjct 55364 CCGAAGGCTGGCGAGAAGAGGCGGAGTGAAGCGAATCAGCGGTCTGATTTACGAAGAAAC 55305 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||| || ||| || || | ||| ||| || ||| ||||| Sbjct 55304 CCGAGGAGTGCTCAAGATCTTTCTGGAGAATGTGATTCGTGACGCTGTCACCTACACCGA 55245 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| ||| ||||||||||| |||||||| |||| || || Sbjct 55244 GCACGCCCGACGCAAGACTGTCACTGCCATGGATGTCGTGTACGC 55200 >seq2855 Length=794884 Score = 118 bits (130), Expect = 2e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 16455 TTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTG 16514 || |||||||||| || || ||||||||||| || || || | || ||| | | |||| Sbjct 178779 TTAGAGATAACATTCAGGGTATCACCAAGCCTGCCATTCGGAGGCTTGCTAGGAGAGGTG 178720 Query 16515 GAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCC 16574 |||| |||||| || ||| || | ||||| |||| ||||| ||| ||||||| || | Sbjct 178719 GAGTAAAGCGTATCAGTGGTCTGATTTATGAGGAGACTCGTGGTGTGCTGAAGATTTTTC 178660 Query 16575 TCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCA 16634 | ||| || || | ||| || | || |||||||||||| || || ||||||| Sbjct 178659 TGGAGAATGTCATTCGTGACGCGGTGACGTACACCGAGCACGCTCGGCGGAAAACTGTCA 178600 Query 16635 CCTCCATGGATATCGTCTATGCATTGAA 16662 | | |||||| | ||||| || ||||| Sbjct 178599 CTGCTATGGATGTTGTCTACGCCTTGAA 178572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071417511941