Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq2878 219 5e-52 seq3792 127 3e-24 seq3761 127 3e-24 seq2371 120 4e-22 seq164 114 2e-20 seq595 109 7e-19 seq3282 87.8 2e-12 >seq2878 Length=397857 Score = 219 bits (242), Expect = 5e-52 Identities = 333/471 (71%), Gaps = 6/471 (1%) Strand=Plus/Plus Query 138035 TAATTTCCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCT 138094 |||||| | || || |||||||| ||||| || || | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 138095 ACTTTGGGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTG 138154 | | ||||| ||||| | ||||| ||| | || |||| |||| | || || | || Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 138155 GACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGA 138214 ||||||||| || || || || || ||| | || || || ||| | || || ||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 138215 GATCTCTCG-TCTGGTAGGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCAT 138271 | || | |||| | || | ||||| || || ||||| || || ||||| || || Sbjct 140468 ACTTGCTAGATCTGTT---CAATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTAT 140524 Query 138272 CGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGC 138331 ||||| || || || || || || |||||||| || ||||| ||||||| ||||| Sbjct 140525 TGCTGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGC 140584 Query 138332 TCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAA 138391 || |||||||| || ||||| || |||| | | || |||| || || ||||| Sbjct 140585 ACCTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAA 140644 Query 138392 CTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCT 138451 |||||| | ||||| || ||||||||||| || || || || | |||| |||||| | Sbjct 140645 CTGGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTT 140704 Query 138452 CTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGA 138502 || || ||||| |||||||| || || |||||||| | ||||||||| || Sbjct 140705 ATGCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGA 140755 >seq3792 Length=366655 Score = 127 bits (140), Expect = 3e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 135727 TTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGC 135786 |||||| | |||||||| ||||||||| ||| || || ||||| || ||||| ||||| Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 135787 TACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCT 135846 ||||||||||||| || ||||||| |||| ||||| |||| || |||||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 135847 TGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAG 135886 || || ||||| ||||| || | |||| |||| ||||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCAG 281973 >seq3761 Length=231418 Score = 127 bits (140), Expect = 3e-24 Identities = 115/142 (81%), Gaps = 6/142 (4%) Strand=Plus/Plus Query 135528 CTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCT---TCTAGCA 135584 |||||||||| | ||||||||||||||||| ||||||||| |||| ||| ||| ||| Sbjct 108177 CTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCT-GCA 108235 Query 135585 ACGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTAT 135644 || ||||| | |||||||| || || ||||||||||||||| ||||||| ||| | | Sbjct 108236 --GCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTGT 108293 Query 135645 ATAATGGTGGTCCTTATCAACT 135666 | || ||||||||||| |||| Sbjct 108294 ACAACGGTGGTCCTTACGAACT 108315 >seq2371 Length=186017 Score = 120 bits (132), Expect = 4e-22 Identities = 93/111 (84%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 135467 TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTT 135526 || ||| ||||||| || || || ||||| || ||||||||||| ||||| |||||||| Sbjct 41006 TTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTATCCGTGAACCTGTA 41065 Query 135527 GCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCT 135577 |||||||||| | ||||||||||||||||| ||||||||| |||| ||| Sbjct 41066 TCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCT 41116 >seq164 Length=700310 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 138700 TACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGA 138759 |||| || || ||||| || || |||||||||||||||||||| ||||| ||||| || | Sbjct 563861 TACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTTGAAA 563920 Query 138760 CCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGG 138819 | || || || || || ||| | | ||||||||| | | || |||||||| || | Sbjct 563921 CTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCTCAAG 563980 Query 138820 ATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAAC 138872 |||| ||||| ||||| |||| || || || || || ||||| | || ||| Sbjct 563981 ATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 564033 >seq595 Length=533780 Score = 109 bits (120), Expect = 7e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 138633 ATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCT 138692 ||||| || || || || | || | |||| ||| |||||| || | ||| | ||| Sbjct 284383 ATGCTATTCGTACCAGTAACTGGATTATGGATGAGTGCTATTGGGGTTGTAGGTTTAGCT 284324 Query 138693 CTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAA 138752 | || |||| || || ||||| || || |||||||||||||||||||| ||||| ||| Sbjct 284323 TTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAA 284264 Query 138753 TTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCT 138812 || || || || || || || || ||| | | ||||||||| | | || |||||||| Sbjct 284263 TTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCA 284204 Query 138813 CCTGTGGATCAACCTCACGA 138832 || ||||| ||||| || Sbjct 284203 GCTCAAGATCAGCCTCATGA 284184 >seq3282 Length=366234 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 136169 GGTATCTGGTTTGCTGCCCTGGGCGTATCT--ACGATGGCGTTCAACCTCAATGGATTCA 136226 ||||| |||||| |||| | || |||| || ||||| |||||| | ||||| || | Sbjct 190886 GGTATTTGGTTTACTGCTTTAGG--TATCAGCACTATGGCTTTCAACTTAAATGGTTTTA 190943 Query 136227 ACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACACCTGGGCAGATGTGC 136286 |||| ||||| || |||| | ||||||||||| | ||||| ||||| ||| | Sbjct 190944 ACTTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTA 191003 Query 136287 TGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 | || |||||| || |||||||| || ||||| || ||| Sbjct 191004 TCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 191044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627935526204800