Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq467 123 7e-24 seq3282 102 2e-17 seq3792 91.5 4e-14 >seq467 Length=265627 Score = 123 bits (136), Expect = 7e-24 Identities = 135/177 (76%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 20106 GGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGA- 20164 || ||| ||||||||||||||||| | |||||||||||||||||||| || || ||||| Sbjct 211273 GGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGAC 211214 Query 20165 TGTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATT 20224 ||||| || |||| || ||||||||| | | || | |||||||| || | Sbjct 211213 AGTCAA-GGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTAT 211155 Query 20225 TGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCTTCGGCTGA 20281 ||||||||||| || || || ||||| |||||||| || || |||||| | | ||| Sbjct 211154 GGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq3282 Length=366234 Score = 102 bits (112), Expect = 2e-17 Identities = 125/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 20085 GGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAAC 20144 || || ||| |||| | | || ||| ||||||||||||||||| | |||||||||||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 20145 TTTAACCAGTCAGTAGTTGA-TGTCAACGGAAAGATAATCCCAACATGGGCTGATGTATT 20203 |||||||| || || ||||| ||||| || |||| || ||||||||| | | Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAA-GGTCGTGTAATTAACACTTGGGCTGATATTAT 191004 Query 20204 AAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCA 20251 || | |||||||| || | ||||||||||| || || || ||||| Sbjct 191005 CAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCA 191052 >seq3792 Length=366655 Score = 91.5 bits (100), Expect = 4e-14 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 19643 TTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGC 19702 |||| | ||||| ||| | || ||||| || |||||| |||| ||| | | || || Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 19703 TCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTC 19761 | |||||| ||||| | | ||||| |||| ||||| ||||| || ||||||||| Sbjct 281874 TACTGCTGT-TTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTT 281932 Query 19762 TTGGTATCTCTGGTACTTTTAACTTTATG 19790 | ||||||||||||||||| || || ||| Sbjct 281933 TAGGTATCTCTGGTACTTTCAATTTCATG 281961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144434504035572