Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq467 141 2e-28 seq3792 125 1e-23 seq3282 120 5e-22 seq3761 109 9e-19 seq2371 95.1 2e-14 seq1308 93.3 7e-14 >seq467 Length=265627 Score = 141 bits (156), Expect = 2e-28 Identities = 135/169 (80%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 212386 GGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 |||||| |||| ||||| |||||| ||||||| || ||||| |||||||| |||||||| Sbjct 211273 GGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGA- 211215 Query 212446 GCA-TCA-GGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTA 212503 || ||| ||| || || ||||||| |||| || | ||| | || |||||||||| Sbjct 211214 -CAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTA 211156 Query 212504 TGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||||||| ||| | || || ||||||||||| || |||||||| Sbjct 211155 TGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGC 211107 >seq3792 Length=366655 Score = 125 bits (138), Expect = 1e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 211924 TACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCT 211983 |||||||||||||||||||||||||| |||||| |||||||| || || | || ||| Sbjct 281815 TACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGCT 281874 Query 211984 TTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTA 212043 ||||| ||| | | ||||| | ||||| || ||||||||||||||||||||| Sbjct 281875 ACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTTA 281934 Query 212044 GGTATATCAGGAACATTCAACTTCATG 212070 ||||| || || || ||||| |||||| Sbjct 281935 GGTATCTCTGGTACTTTCAATTTCATG 281961 >seq3282 Length=366234 Score = 120 bits (132), Expect = 5e-22 Identities = 127/164 (77%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 212371 TGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAAC 212430 ||||| || || | |||||| |||| ||||| |||||| ||||||| || ||||| ||| Sbjct 190892 TGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAAC 190951 Query 212431 CAATCAGTTGTTGATGCA-TCA-GGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACA 212488 ||||| |||||||| || ||| ||| || || ||||||| |||| || | ||| Sbjct 190952 CAATCTGTTGTTGA--CAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACC 191009 Query 212489 GAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACAC 212532 | || ||||||||||||||||||||||| ||| | || || ||| Sbjct 191010 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq3761 Length=231418 Score = 109 bits (120), Expect = 9e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 211720 GTAGCTGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCA 211779 ||| ||||||| | | || || || |||||||| |||||||| || |||| | || Sbjct 108173 GTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCT 108232 Query 211780 AACGCAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTC 211839 || ||||||||||||||||| ||||| |||||||| || || ||||||| ||| | Sbjct 108233 GCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTG 108292 Query 211840 TACAATGGTGGTCCTTAC 211857 ||||| |||||||||||| Sbjct 108293 TACAACGGTGGTCCTTAC 108310 >seq2371 Length=186017 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 211672 GCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCA 211731 || || || ||||| ||||| || ||||| ||||| ||||||||||| ||| ||||||| Sbjct 41015 GCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTATCCGTGAACCTGTATCTGGTTCT 41074 Query 211732 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 211791 | | || || || |||||||| |||||||| || |||| | || || |||||| Sbjct 41075 CTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCAGCTATCGGT 41134 Query 211792 TTACACT 211798 ||||||| Sbjct 41135 TTACACT 41141 >seq1308 Length=500924 Score = 93.3 bits (102), Expect = 7e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526 ||||||| |||| || | ||| | || ||||||||||||||||||||||| ||| | || Sbjct 59751 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 59692 Query 212527 GCACACAACTTCCCACTTGACTTAGC 212552 || ||||||||||| || |||||||| Sbjct 59691 GCTCACAACTTCCCTCTAGACTTAGC 59666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807513439301720