Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq2878 183 3e-41 seq164 123 3e-23 seq467 111 2e-19 seq3761 98.7 1e-15 seq595 96.9 4e-15 seq3282 86.0 7e-12 seq1308 86.0 7e-12 >seq2878 Length=397857 Score = 183 bits (202), Expect = 3e-41 Identities = 320/465 (69%), Gaps = 8/465 (2%) Strand=Plus/Plus Query 171966 AACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTC 172025 || ||||||||||| || || || || || | || | | | |||| | || | || Sbjct 140289 AATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATTA 140348 Query 172026 CTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGG 172085 ||||||||||||| |||||||| ||| || || |||| ||||||||||| ||||| Sbjct 140349 TTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATGG 140408 Query 172086 AACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAG 172145 | |||||||| | ||||| | |||| | ||||| || ||| | |||| ||||| Sbjct 140409 ACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGAA 140468 Query 172146 ATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCA 172205 |||| || |||| |||||||||| || ||| | || || || | | |||||| Sbjct 140469 CTTGCTAGATCTGTTCAATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGCT 140528 Query 172206 GTATTCACGAGCATC----TTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGC 172261 || || | ||| ||||| || ||||| ||||| || ||||||| || || Sbjct 140529 GTTTT----TGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGC 140584 Query 172262 ACCTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAA 172321 |||| |||||||| || ||||| ||| | | |||| | || | || || || || || Sbjct 140585 ACCTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAA 140644 Query 172322 TATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACT 172381 ||| | || ||||| |||||||||||||| || || | | |||| || | | Sbjct 140645 CTGGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTT 140704 Query 172382 ATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGA 172426 ||| || || || ||||| || || |||| || || | |||||| Sbjct 140705 ATGCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGA 140749 >seq164 Length=700310 Score = 123 bits (136), Expect = 3e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 172656 GCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTC 172715 || ||||| ||||| || ||||| || | |||||||| || ||||| |||||||| || Sbjct 563866 GCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTTGAAACTTTT 563925 Query 172716 TACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAA 172775 || || || || ||| | | ||||||||||| ||||| |||||| || || ||||| Sbjct 563926 TATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCTCAAGATCAG 563985 Query 172776 CCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAAC 172823 || ||||| || |||| |||||||| || || ||||||| || ||| Sbjct 563986 CCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 564033 >seq467 Length=265627 Score = 111 bits (122), Expect = 2e-19 Identities = 135/181 (75%), Gaps = 10/181 (6%) Strand=Plus/Minus Query 171482 GGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT 171541 |||||| | || ||||| |||||| | || || || ||||| |||||||| ||||| || Sbjct 211273 GGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGA- 211215 Query 171542 GCAAACGGAAAGATTGT---ACCAACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTG 171596 || | ||| | || | |||| |||| ||| || | ||| | || ||||||| Sbjct 211214 -CAGTC---AAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTG 211159 Query 171597 GAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTG 171656 | |||||||||||||||||| | || || ||||||||||| |||||| |||| ||| || Sbjct 211158 GTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTG 211099 Query 171657 A 171657 | Sbjct 211098 A 211098 >seq3761 Length=231418 Score = 98.7 bits (108), Expect = 1e-15 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 170822 GGTTCT-TTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGC 170880 |||||| ||||| || || || |||||||| ||||||||| | |||| | || || Sbjct 108179 GGTTCTCTTCTT-TACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCAGC 108237 Query 170881 AATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAA 170940 || || ||||||||||| || || |||||||| || || | || || ||||||||||| Sbjct 108238 TATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTGTACAA 108297 Query 170941 CGGAGGTCCTTAC 170953 ||| ||||||||| Sbjct 108298 CGGTGGTCCTTAC 108310 >seq595 Length=533780 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 172656 GCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTC 172715 || ||||| ||||| || ||||| || | |||||||| || ||||| |||||||| || Sbjct 284311 GCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTTGAAACTTTT 284252 Query 172716 TACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAA 172775 || || || || ||| | | ||||||||||| ||||| |||||| || || ||||| Sbjct 284251 TATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCTCAAGATCAG 284192 Query 172776 CCCCATGA 172783 || ||||| Sbjct 284191 CCTCATGA 284184 >seq3282 Length=366234 Score = 86.0 bits (94), Expect = 7e-12 Identities = 121/167 (72%), Gaps = 10/167 (6%) Strand=Plus/Plus Query 171467 TGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAAC 171526 ||||| || || | |||||| | || ||||| |||||| | || || || ||||| ||| Sbjct 190892 TGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAAC 190951 Query 171527 CAATCAGTTGTAGATGCAAACGGAAAGATTGT---ACCAACA--TGGGGAGATGTTCTTA 171581 ||||| ||||| || || | ||| | || | |||| |||| ||| || | | Sbjct 190952 CAATCTGTTGTTGA--CAGTC---AAGGTCGTGTAATTAACACTTGGGCTGATATTATCA 191006 Query 171582 ACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACAC 171628 || | || |||||||| |||||||||||||||||| | || || ||| Sbjct 191007 ACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq1308 Length=500924 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 171563 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 171622 || |||| ||| || | ||| | || |||||||| |||||||||||||||||| | || Sbjct 59751 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 59692 Query 171623 GCACACAACTTCCCACTAGACCTAGCATCTGCTGA 171657 || ||||||||||| |||||| |||| ||| ||| Sbjct 59691 GCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570239309974680