Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_007051.1 Length=41318 Score E Sequences producing significant alignments: (Bits) Value seq899 100 8e-17 >seq899 Length=1674 Score = 100 bits (110), Expect = 8e-17 Identities = 170/248 (69%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 30391 GACTTTTCTGCAATAGAAGCGCGTGTTATTGCATGGTATGCGAAAGAACAGTGGCGATTA 30450 ||||| ||||| || || || || || ||||| ||| || | || | ||||| | Sbjct 405 GACTTCTCTGCCATTGAGGCCCGCGTGATTGCCTGGCTGGCTCAGGAGCTTTGGCGCCTG 464 Query 30451 GATGTGTTTAATACACATGGCAAAATTTATGAGGCGTCAGCTGCACAAATGTTTGGCGTT 30510 || |||||| || || ||||| || || |||||||| || | |||||||||||||| Sbjct 465 GAGGTGTTTGCAACCCACGGCAAGATATACGAGGCGTCTGCATCTCAAATGTTTGGCGTG 524 Query 30511 CCAGTTGACTCCATaaaaaaaGGTGACCC---------ACTCAGACAAAAAGGTAAAGTA 30561 || |||| || || ||||| |||| ||||| ||||| || ||||| Sbjct 525 CCGCTTGAGCGGATTAAGAAAGGCAACCCGGAATATGAGCTCAGGCAAAAGGGCAAAGTC 584 Query 30562 TCAGAATTGGCATTGGGCTATCAAGGTGGCCCAGGAGCCTTAAAAGCAATGGGTGCTTTG 30621 | || |||| |||||||| ||||| || | || || || | |||||||| || | Sbjct 585 GCGGAGCTGGCCTTGGGCTACCAAGGGGGATCGGGCGCTTTGATTGCAATGGGAGCCCTT 644 Query 30622 GATATGGG 30629 || ||||| Sbjct 645 GACATGGG 652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132089510536320