Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq4073 113 4e-20 seq487 105 6e-18 seq2625 89.7 5e-13 seq4017 86.0 6e-12 seq824 82.4 7e-11 >seq4073 Length=488838 Score = 113 bits (124), Expect = 4e-20 Identities = 132/178 (74%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| |||||| ||||| ||||| || ||||||||||| Sbjct 172939 GACACCATCGACAACGTCAAAGCGAAGATTCAGGACAAGGAAGGTATTCCTCCCGATCAG 172880 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | || ||| || ||||||||||||| ||| | || |||||| Sbjct 172879 CAGAGGTTGATCTTCGCCGGTAAGCAACTCGAAGATGGGCGAACTCTTGCAGATTATAAC 172820 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA---AAATAT 27003 ||||| ||||| || || | ||||| ||||| | ||||||||||||| |||||| Sbjct 172819 ATTCAGAAAGAGTCCACCCTGCATCTTGTCCTCCGTCTTAGAGGAGGAATGTAAATAT 172762 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || |||||||| || || || | ||||| | || | || Sbjct 173227 ATGCAAATCTTCGTGAAAACATTGACCGGCAAGACCATCACTCTGGAGGTCGAGAGCTCG 173168 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| |||||| ||||| ||||| || |||||||| || Sbjct 173167 GACACCATCGACAACGTCAAAGCGAAGATTCAGGACAAGGAAGGTATTCCTCCCGACCAG 173108 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | || ||| || || |||||||||| ||| | || |||||| Sbjct 173107 CAGAGGTTGATCTTCGCCGGTAAGCAGCTCGAAGATGGGCGAACTCTGGCAGATTATAAC 173048 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||||| || || | ||||| ||||| | || |||||||| Sbjct 173047 ATTCAGAAAGAGTCCACCCTGCATCTTGTCCTCCGTCTCAGAGGAGG 173001 >seq487 Length=466406 Score = 105 bits (116), Expect = 6e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| |||||| ||||||||||| || || || || || Sbjct 177095 CGACACCATCGATAATGTCAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCAGACCA 177154 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || ||||| || | || |||||| || |||||||||| ||| || |||||||| Sbjct 177155 GCAGAGACTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGAACTCTCGCGGACTATAA 177214 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| ||||| || || ||| ||||| |||| || | || || ||||| Sbjct 177215 CATCCAAAAGGAGTCCACTCTCCATTTGGTGCTTCGTCTCAGGGGAGG 177262 >seq2625 Length=346021 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| |||||| ||||| ||||| || ||||| ||||| Sbjct 281851 GACACGATTGACAACGTGAAAACGAAGATTCAGGACAAGGAAGGCATCCCTCCAGATCAG 281910 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | |||| | || || ||||| || || | | | | | | |||||| ||| Sbjct 281911 CAGAGGTTGATTTTTGCAGGAAAGCAACTTGAGGACGGTCGTACCTTGGCCGACTACAAC 281970 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||| || ||||| ||||| ||||| |||| || || ||||||| Sbjct 281971 ATTCAAAAGGAGTCTACCCTCCATTTGGTCTTGAGGCTGAGGGGAGGAA 282019 >seq4017 Length=874442 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| ||||| ||||| ||||| || ||||||||||| Sbjct 473631 GACACCATCGACAATGTCAAAACCAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCAG 473690 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | | || || || || ||||||| ||| | | || || || Sbjct 473691 CAGAGATTGATCTTTGCAGGAAAGCAGCTGGAAGATGGACGAACCCTGGCGGATTACAAT 473750 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||||||||| ||| | ||||| || ||||| || |||| || Sbjct 473751 ATCCAAAAAGAATCAACTCTGCATCTTGTTCTGAGGCTGCGAGGTGG 473797 >seq824 Length=416372 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26787 ACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTC 26846 ||| |||| || || | |||||| |||| | || || ||||||||||| | || Sbjct 211962 ACAGTAACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCTGACACCATCGACAATGTG 212021 Query 26847 AAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGC 26906 || ||||| ||||| || ||||| || || || || || || | || | || Sbjct 212022 AAGACCAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCAGCAGCGATTGATCTTCGCT 212081 Query 26907 GGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACT 26966 ||||| || || ||||||| | | | | | |||||| ||||| || || || ||||| Sbjct 212082 GGCAAGCAGCTTGAAGATGGTCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCTACC 212141 Query 26967 ATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 | || ||||| || |||||| | |||||| Sbjct 212142 CTGCACCTGGTGCTCAGACTTCGTGGAGGA 212171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478637647170640