Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4073 122 7e-23 seq4017 118 9e-22 seq487 105 6e-18 seq2625 98.7 9e-16 >seq4073 Length=488838 Score = 122 bits (134), Expect = 7e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || |||||| | || || || | || || | || |||||| | Sbjct 172999 ATGCAAATCTTCGTGAAAACACTGACCGGCAAGACCATCACTCTGGAGGTCGAGAGCTCG 172940 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| |||||| ||||| ||||| || ||||||||||| Sbjct 172939 GACACCATCGACAACGTCAAAGCGAAGATTCAGGACAAGGAAGGTATTCCTCCCGATCAG 172880 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| |||||||||||||||| ||| | ||||||||| Sbjct 172879 CAGAGGTTGATCTTCGCCGGTAAGCAACTCGAAGATGGGCGAACTCTTGCAGATTATAAC 172820 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAATGATTC 24230 ||||| ||||| || || | ||| | || | | | ||||||||| | ||| |||| Sbjct 172819 ATTCAGAAAGAGTCCACCCTGCATCTTGTCCTCCGTCTTAGAGGAGGAATGTAAATATTC 172760 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || |||||||| || || || | || || | || |||||| | Sbjct 173227 ATGCAAATCTTCGTGAAAACATTGACCGGCAAGACCATCACTCTGGAGGTCGAGAGCTCG 173168 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| |||||| ||||| ||||| || |||||||| || Sbjct 173167 GACACCATCGACAACGTCAAAGCGAAGATTCAGGACAAGGAAGGTATTCCTCCCGACCAG 173108 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| ||||| |||||||||| ||| | ||||||||| Sbjct 173107 CAGAGGTTGATCTTCGCCGGTAAGCAGCTCGAAGATGGGCGAACTCTGGCAGATTATAAC 173048 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| ||||| || || Sbjct 173047 ATTCAGAAAGAGTCCAC 173031 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || | ||||| | || || || | | Sbjct 173455 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAGACCATTACTTTAGAGGTGGAAAGCTCC 173396 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| || || ||||||||||| || ||||| ||||| Sbjct 173395 GACACGATCGACAACGTCAAGGCGAAAATCCAGGACAAAGAAGGAATCCCTCCTGATCAG 173336 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| ||||| |||||||||| ||| | || ||||| Sbjct 173335 CAGAGGTTGATCTTCGCCGGTAAGCAGCTCGAAGATGGGCGAACTCTGGCAGACTATAAT 173276 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||| ||||| | ||| | ||| | | | |||||||| Sbjct 173275 ATACAGAAAGAGTCTACCCTGCATCTTGTGCTCCGTCTCAGAGGAGG 173229 >seq4017 Length=874442 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| || ||||| || || || | || || | || ||||| Sbjct 471971 CAAGATGCAGATCTTTGTGAAGACATTGACGGGGAAGACCATCACTCTTGAGGTCGAAAG 472030 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||| || ||||| | || || |||||| ||||| || || || |||||||| Sbjct 472031 CTCCGATACGATCGACAATGTTAAGACCAAGATTCAGGACAAGGAGGGTATTCCTCCCGA 472090 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATT 24165 || ||||| ||||||| || ||||||||||||||| |||| || || | || |||| Sbjct 472091 CCAGCAGAGGCTGATTTTCGCCGGCAAGCAACTCGAGGATGGGAG-GACATTGGCTGATT 472149 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||| ||||| || |||||| | || || || || ||| |||| || || Sbjct 472150 ATAACATCCAAAAGGAGTCTACATTGCACTTGGTCTTGAGACTGAGGGGTGG 472201 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 24050 CGACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 |||||||||||| | || || || ||| ||| ||||| |||||||| || || || | Sbjct 473174 CGACACCATCGACAATGTGAAGACCAAA-ATTCAAGACAAGGAAGGCATTCCCCCAGACC 473232 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | ||| || |||| | || || || || |||||||||| ||| | | ||| |||| Sbjct 473233 AGCAGCGATTGATCTTCGCTGGGAAACAGCTCGAAGATGGCAGGACTTTGGCCGACTATA 473292 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| ||||| || ||||| ||||| | ||||| | |||||||| || Sbjct 473293 ACATCCAAAAGGAGTCTACTCTTCATCTTGTGTTGCGGTTGAGAGGTGG 473341 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || || || | || || |||| ||||| | Sbjct 473571 ATGCAGATCTTCGTGAAGACCTTGACCGGGAAGACTATCACTCTCGAGGTCGAAAGCTCT 473630 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||| ||||| || ||||||||||| Sbjct 473631 GACACCATCGACAATGTCAAAACCAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCAG 473690 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | | || ||||| || ||||||| ||| | | ||||| || Sbjct 473691 CAGAGATTGATCTTTGCAGGAAAGCAGCTGGAAGATGGACGAACCCTGGCGGATTACAAT 473750 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAA 24224 || ||||||||||| || | ||| | || | || || |||| || || ||| Sbjct 473751 ATCCAAAAAGAATCAACTCTGCATCTTGTTCTGAGGCTGCGAGGTGGTCTGTAA 473804 >seq487 Length=466406 Score = 105 bits (116), Expect = 6e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | ||||| |||||| ||||||||||| || || || || || Sbjct 177095 CGACACCATCGATAATGTCAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCAGACCA 177154 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||||||||| | || ||||||||| |||||||||| | ||| || || ||||| Sbjct 177155 GCAGAGACTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGAACTCTCGCGGACTATAA 177214 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||| ||||| || || || | ||||| ||| Sbjct 177215 CATCCAAAAGGAGTCCACTCTCCATTTGGTG 177245 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| || ||| | | Sbjct 176124 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTGGAGAGCTCC 176183 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| ||||| || || || || || || || Sbjct 176184 GACACCATCGACAACGTGAAAGCTAAGATTCAGGACAAGGAGGGAATTCCCCCAGACCAG 176243 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||||| || ||||||||| | ||||| | | ||| || || || ||| Sbjct 176244 CAGAGGCTGATTTTCGCTGGCAAGCAATTGGAAGACGGCCGAACTCTCGCGGACTACAAC 176303 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || || || |||| || ||| | | ||||| ||||| Sbjct 176304 ATCCAAAAGGAGTCGACTCTTCACTTGGTGCTTCGGTTGAGGGGAGG 176350 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 24071 ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGG 24130 ||| |||||| ||||| ||||| || || || || || ||||| ||||| | || || Sbjct 183185 ACANAAGATTCAGGACAAGGAAGGAATTCCACCAGACCAGCAGAGGCTGATCTTCGCTGG 183244 Query 24131 CAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAAT 24190 |||||| |||||||||| | | | || || || |||||||| || || ||||| | Sbjct 183245 CAAGCAGCTCGAAGATGGCCGCACGCTCGCAGACTACAACATTCAGAAGGAGTCTACTCT 183304 Query 24191 TCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| ||| | | |||||||||||| Sbjct 183305 CCATTTGGTGCTCCGTTTGAGAGGAGGA 183332 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | || || ||| | || || | ||||| ||| | Sbjct 183332 AATGCAAATCTTCGTCAAGACTCTGACGGGGAAAACCATCACTCTGGAAGTGGAGAGCTC 183391 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || ||| || || ||||| || || || |||||||| || Sbjct 183392 TGACACCATCGACAATGTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCCGACCA 183451 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||| | || |||||||| || ||||||| | | | |||||| || Sbjct 183452 GCAGCGATTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACACTGGCCGATTACAA 183511 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||||||| || || | ||| | ||||| | || |||||||| Sbjct 183512 CATTCAAAAAGAGTCGACGTTGCATCTGGTGTTGCGTCTGCGAGGAGGA 183560 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || || |||| |||||| || Sbjct 175896 ATGCAGATCTTCGTGAAGACTCTGACGGGGAAGACCATCACGCTCGAGGTCGAGAGCAGT 175955 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | || || || ||| ||||| || || || ||||| || || Sbjct 175956 GATACCATCGACAATGTGAAGGTTAAAATTCAGGACAAGGAGGGAATTCCTCCTGACCAG 176015 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || |||||||||||||||||| | | | | | ||| || ||| Sbjct 176016 CAGAGGCTGATCTTCGCCGGCAAGCAACTCGAAGACGGACGCACCCTTGCCGACTACAAC 176075 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| ||| | ||| | ||| | | ||||| ||||| Sbjct 176076 ATCCAGAAGGAATCCACACTCCATCTGGTGCTTCGGTTGAGGGGAGG 176122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| |||| || |||| || || | | Sbjct 182554 ATGCAAATCTTCGTGAAGACCCTCACAGGAAAGACGATCACTCTCGAGGTGGAAAGCTCC 182613 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||| | || | || || ||| || ||||| ||||| || || || || || Sbjct 182614 GACACCGTGGACAACGTGAAGGCAAAAATCCAGGACAAGGAAGGGATTCCACCAGACCAG 182673 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || || ||||| |||||||||| | | | || || || ||| Sbjct 182674 CAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAAGATGGCCGCACTCTCGCAGACTACAAC 182733 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || ||||| || || || | ||||| ||| | | |||||||||||| Sbjct 182734 ATCCAAAAGGAGTCCACTCTCCATTTGGTGCTCCGTTTGAGAGGAGGA 182781 >seq2625 Length=346021 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || ||| | |||||| |||| |||||| Sbjct 280423 ATGCAAATTTTCGTTAAAACTCTGACGGGGAAAACCATTACCCTCGAGGTCGAGAGTTCT 280482 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| || || || || || || || ||||| Sbjct 280483 GACACCATCGACAATGTCAAGACTAAGATCCAGGATAAGGAGGGAATCCCCCCAGATCAG 280542 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || |||||| ||||| || || | | | | | ||| || ||| Sbjct 280543 CAGAGGTTGATCTTCGCCGGCAAACAACTAGAGGACGGCCGGACGCTGGCCGACTACAAC 280602 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||| || || ||||| | || | |||||||| ||||| Sbjct 280603 ATTCAGAAAGAGTCCACGCTTCATCTTGTTCTGAGATTGAGGGGAGG 280649 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||||| || || || | || || | || || ||| | Sbjct 281791 ATGCAGATTTTTGTGAAGACATTGACCGGTAAGACCATCACTCTTGAGGTGGAGAGCTCT 281850 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| |||||| ||||| |||||||| ||||| ||||| Sbjct 281851 GACACGATTGACAACGTGAAAACGAAGATTCAGGACAAGGAAGGCATCCCTCCAGATCAG 281910 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| | || |||||||| || || | | | | | ||| || ||| Sbjct 281911 CAGAGGTTGATTTTTGCAGGAAAGCAACTTGAGGACGGTCGTACCTTGGCCGACTACAAC 281970 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||| || ||||| | ||||| || || || |||| |||||| Sbjct 281971 ATTCAAAAGGAGTCTACCCTCCATTTGGTCTTGAGGCTGAGGGGAGGA 282018 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || ||||| | || ||| | || ||||| | | Sbjct 280879 ATGCAGATATTTGTGAAGACGCTTACAGGAAAGACCATCACCTTGGAGGTCGAAAGCTCC 280938 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| || || || || || ||||| || ||| Sbjct 280939 GACACCATCGACAACGTCAAAACCAAGATCCAAGATAAGGAGGGTATTCCTCCAGACCAA 280998 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | | || ||||| | || || | | ||| | ||||||||| Sbjct 280999 CAGAGATTGATCTTTGCAGGTAAGCAGTTGGAGGACGGCCGAACGCTGGCCGATTATAAT 281058 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || ||||| | ||| | || || |||||||| ||||| Sbjct 281059 ATACAGAAGGAGTCTACTCTCCATCTCGTCTTGAGATTGAGGGGAGG 281105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429914322761235