Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq487 100 2e-16 seq2625 93.3 4e-14 >seq487 Length=466406 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| || ||||| || || ||||| |||||||| || | ||| |||| | Sbjct 183332 AATGCAAATCTTCGTCAAGACTCTGACGGGGAAAACCATCACTCTGGAAGTGGAGAGCTC 183391 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| | | |||| || ||| ||||| || || || || | || || | Sbjct 183392 TGACACCATCG-ACAATGTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCCGACC 183450 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || | || | || ||||| || | ||||||| || |||||||||| | Sbjct 183451 AGCAGCGATTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACACTGGCCGATTACA 183510 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 |||||||||||||||| || | ||| |||||||| | ||||||||||||| Sbjct 183511 ACATTCAAAAAGAGTCGACGTTGCATCTGGTGTTGCGTCTGCGAGGAGGAAA 183562 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || || || |||||||| || || ||||| || || | ||| |||| | Sbjct 182781 AATGCAGATCTTCGTAAAAACGCTGACCGGCAAAACGATCACTCTGGAAGTGGAGAGCTC 182840 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||||| | | |||| || ||| || ||| || || || ||| | || ||||| Sbjct 182841 CGACACTATCG-ACAACGTTAAAGCTAAGATTCAGGACAAGGAGGGCATTCCTCCTGATC 182899 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||||||| | || | || || || || | ||||||| ||| | || || || | Sbjct 182900 AGCAAAGATTGATCTTCGCTGGTAAGCAGCTCGAAGATGGTCGTACCCTCGCAGACTACA 182959 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTG 115495 |||| ||||| ||||| ||| | ||| ||||| Sbjct 182960 ACATCCAAAAGGAGTCCACTCTCCATTTGGTG 182991 >seq2625 Length=346021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || || | || || || ||||| || | || |||| | Sbjct 281791 ATGCAGATTTTTGTGAAGACATTGACCGGTAAGACCATCACTCTTGAGGTGGAGAGCTCT 281850 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || ||| || ||| || || |||||| |||| ||||| Sbjct 281851 GACACGATTG-ACAACGTGAAAACGAAGATTCAGGACAAGGAAGGCATCCCTCCAGATCA 281909 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| || || ||| | || || | ||| ||||||| || || Sbjct 281910 GCAGAGGTTGATTTTTGCAGGAAAGCAACTTGAGGACGGTCGTACCTTGGCCGACTACAA 281969 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||| |||||||| | ||| |||| ||||| || | ||||||| Sbjct 281970 CATTCAAAAGGAGTCTACCCTCCATTTGGTCTTGAGGCTGAGGGGAGGAA 282019 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||| || |||||||| || ||||| || | || || | Sbjct 280195 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACCATCACTCTTGAGGTCGAAAGCTCT 280254 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | ||||| || || |||||| ||||| || ||| | ||| ||| || Sbjct 280255 GATAC-GATCGACAATGTGAAGACGAAAATTCAAGATAAGGAGGGCATTCCCCCTGACCA 280313 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | | |||| || || |||||| | ||||| | || ||||||| || || Sbjct 280314 GCAGCGGTTGATTTTCGCCGGTAAACAACTCGAAGACGGTCGCACGCTGGCCGACTACAA 280373 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| ||||||||||| ||| | ||| | |||||||| |||||||||| Sbjct 280374 CATCCAAAAAGAGTCCACTTTGCATCTTGTGTTGAGGCTGCGAGGAGG 280421 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || ||||||||||| |||||||| || | || || | Sbjct 280651 ATGCAGATCTTCGTGAAGACGCTCACGGGGAAAACCATCACGTTGGAGGTCGAAAGCTCT 280710 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| ||| || ||| |||||| || || || || |||| ||||| Sbjct 280711 GACACAATTG-ACATCGTGAAAACCAAAATTCAGGACAAGGAGGGAATCCCTCCAGATCA 280769 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | || | ||| ||||| || || ||||||| ||| | || || || || Sbjct 280770 GCAGAGGTTGATCTTTGCAGGCAAGCAGTTGGAAGATGGTCGTACCCTCGCGGACTACAA 280829 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| ||||||||||| ||| | ||| | ||| |||| ||| | ||||| Sbjct 280830 CATCCAAAAAGAGTCGACTCTGCATCTTGTGCTGAGGTTGAGGGGAGG 280877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425322554288440