Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq594 104 3e-17 >seq594 Length=317990 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || || || |||| ||| | |||||||| || |||||| || ||| || | || ||| Sbjct 156580 CCACCTTGGTCTACGTAGCGAGCGGTGTCGTTGAAAACTCGCAGCATCGGCAGGATGCCA 156639 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 ||||| || |||||||||||| ||| ||||| || |||||||||| ||| | ||| Sbjct 156640 TTGGACGTTCCATTGGTCCCTCTGATGTAGCTACCGGTGGCACGAATGTTATGTACTGAG 156699 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 || || ||||||||||| ||| | | || || || || || || || || Sbjct 156700 AGTCCGATTCCCCCTGCTGACTTACTTACAACAGCACACTCCTTCAAAGTGTCGTAAATT 156759 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| || || || || ||||| | |||||| |||||| Sbjct 156760 CCCTCGATGCTGTCGTCTTTCATGCAGATTAGAAAGCAGCTA 156801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633599233305200