Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq2878 275 7e-69 seq467 150 2e-31 seq3282 141 1e-28 seq164 125 8e-24 seq595 113 5e-20 seq1308 111 2e-19 seq3761 100 3e-16 seq3792 98.7 1e-15 seq263 86.0 7e-12 >seq2878 Length=397857 Score = 275 bits (304), Expect = 7e-69 Identities = 364/505 (72%), Gaps = 0/505 (0%) Strand=Plus/Plus Query 167470 TAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCT 167529 ||||||| | || || || || || ||||| || | | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 167530 ACTTTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTG 167589 | | ||||| ||||| | || || ||||| | | |||||||| | || || | || Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 167590 GGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGA 167649 | ||||||| || || || || || ||||| | ||||| |||||| | || |||||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 167650 GATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGC 167709 | |||| || | |||||||| ||||| ||||| |||||||| || ||||| Sbjct 140468 ACTTGCTAGATCTGTTCAATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGC 140527 Query 167710 TGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACC 167769 ||| ||||| ||||||||||| || |||||| | ||||| || ||||||| |||||||| Sbjct 140528 TGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACC 140587 Query 167770 GTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTG 167829 |||||||| || || || |||||||| | || || | || || || |||||||| Sbjct 140588 TAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTG 140647 Query 167830 GACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTC 167889 ||| | ||||| |||||||||||||| || ||||| | |||| | ||| | | | Sbjct 140648 GACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATG 140707 Query 167890 TGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACAC 167949 ||||| || |||| ||| || ||||||||| | | |||||||||||| |||||||| Sbjct 140708 CGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACAC 140767 Query 167950 TTTCAAAGCATTTGATACGACTCAG 167974 ||| || ||| | | |||||| Sbjct 140768 ATTCCGTGCTTTTAACCCAACTCAG 140792 >seq467 Length=265627 Score = 150 bits (166), Expect = 2e-31 Identities = 143/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 166863 TGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCAT 166922 |||| | ||| | ||||| ||||| |||||| | || ||||| ||||| ||||| || | Sbjct 211280 TGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGT 211221 Query 166923 CATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCT 166982 | || |||| |||||||| | ||||||||||| ||| | ||||||||||| || Sbjct 211220 TGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCT 211161 Query 166983 GGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCTGC 167042 ||||||||||| ||||| || ||||| ||||||||||||||||| || | ||||||| Sbjct 211160 TGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGT 211101 Query 167043 TGA 167045 ||| Sbjct 211100 TGA 211098 >seq3282 Length=366234 Score = 141 bits (156), Expect = 1e-28 Identities = 132/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 166849 GGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAAC 166908 ||||| |||||||||||| | ||| | ||||| ||||| |||||| | || ||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 166909 TTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTC 166968 || ||||| || | | || |||| |||||||| | ||||||||||| ||| | || Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 166969 AACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCAC 167016 ||||||||| || ||||||||||| ||||| || ||||| |||||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq164 Length=700310 Score = 125 bits (138), Expect = 8e-24 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 168131 AATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTT 168190 ||| | ||||| || || ||||| || || ||| || | ||||||||||||||||| ||| Sbjct 563857 AATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTT 563916 Query 168191 GAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCA 168250 |||||||| ||||| ||||| || | | |||||||| | | || |||||||| | Sbjct 563917 GAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCT 563976 Query 168251 GTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAAC 168307 ||| || || |||||||| ||||||||||||| || || ||||| | || ||| Sbjct 563977 CAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 564033 >seq595 Length=533780 Score = 113 bits (124), Expect = 5e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 168068 ATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCA 168127 ||||| ||||| || || | ||| | |||| ||| ||||||| | | ||| | || Sbjct 284383 ATGCTATTCGTACCAGTAACTGGATTATGGATGAGTGCTATTGGGGTTGTAGGTTTAGCT 284324 Query 168128 CTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAG 168187 | ||| | ||||| || || ||||| || || ||| || | ||||||||||||||||| Sbjct 284323 TTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAA 284264 Query 168188 TTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCT 168247 ||||||||||| ||||| ||||| || | | |||||||| | | || |||||||| Sbjct 284263 TTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCA 284204 Query 168248 CCAGTAGACCAACCACATGA 168267 | ||| || || ||||| Sbjct 284203 GCTCAAGATCAGCCTCATGA 284184 >seq1308 Length=500924 Score = 111 bits (122), Expect = 2e-19 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 166932 TCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGA 166991 ||| |||||||| | ||||||||||| ||| | ||||||||||| || |||||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 166992 AGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCTGCTGA 167045 ||| ||||| || ||||| ||||||||||||||||| || | ||||||| ||| Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 >seq3761 Length=231418 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 166202 CCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTCCT 166261 ||||| | || ||||| | || || || |||||||| ||||||||| || | || ||| Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 166262 CCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGC 166321 | || || ||| | |||||||| || || |||||||| || || ||||||||||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 166322 TTTATAACGGTGGTCCTT 166339 | || ||||||||||||| Sbjct 108291 TGTACAACGGTGGTCCTT 108308 >seq3792 Length=366655 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 166407 TTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGC 166466 |||||| | |||||||||||||||||| || ||||| || || || ||||| || || Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 166467 ATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCT 166526 | || || ||| || |||| ||| | |||||||| |||||| |||| ||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 166527 GGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCA 166565 |||||| ||| || ||||| | |||| ||| |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq263 Length=1363 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 106528 GGCGCTGGTCACTTCGTAAAGATGGTGCATAATGGAATCGAATACGGAATCATGCAAGCA 106587 ||||| ||||||||||| |||||||| ||||| || ||||||||||| || ||||| || Sbjct 1256 GGCGCCGGTCACTTCGTCAAGATGGTCCATAACGGCATCGAATACGGCATGATGCAGGCC 1197 Query 106588 TATGCAGAAGGATTTAA 106604 ||||| ||||| || || Sbjct 1196 TATGCCGAAGGCTTCAA 1180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567202667015200