Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4017 93.3 3e-14 seq2625 93.3 3e-14 seq487 91.5 1e-13 seq4073 87.8 1e-12 >seq4017 Length=874442 Score = 93.3 bits (102), Expect = 3e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||| | ||| ||||| ||||| ||| |||||| || ||||||||||| || Sbjct 472430 ACCTCCTCTCAGTCTCAGAACCAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGC 472371 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | ||| | | || || | |||||||||||||| ||||| |||||||| || Sbjct 472370 C-AGCGTCCTTCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTC 472317 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||||| ||| || |||||||| ||| |||||| || |||||||| || | Sbjct 472886 ACCTCCTCTCAGCCTCAGTACGAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTC-GG 472828 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| || | | |||| || | |||||||| || || || || |||||||| || Sbjct 472827 CAAGGGTCCTCCCGTCCTCAAGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTC 472773 >seq2625 Length=346021 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| | || ||||||||| || ||| |||||| || |||||||| || || Sbjct 281334 ACCTCCCCTCAATCTCAACACCAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGC 281275 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| |||| ||||| ||||| |||||||| |||| ||||||||||| Sbjct 281274 CAGCGTTCGGCCGTCCTCCAACTGCTTACCGGCAAAAATCAACCGCTGCTGATC 281221 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| | ||| |||| ||| || |||||||||||||| || ||||| || ||| Sbjct 280193 CCTCCACGCAGTCTCAGAACCAAATGCAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCC 280134 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | |||||||||||| || |||| |||||||| || || Sbjct 280133 AAACTGCGACCATCCTCGAGTTGCTTGCCGGCGAAAATCAACCGCTGCTGGTCAGGGGGG 280074 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||||| Sbjct 280073 ATGCCCTCCTTGTCCTGGATTTT 280051 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| |||| | ||| || |||||||||||| ||| |||||||||||||| || ||| Sbjct 280649 CCTCCCCTCAATCTCAGAACAAGATGAAGCGTGGACTCTTTCTGAATGTTGTAGTCGGCC 280590 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || |||| || | ||| |||||||| || |||| | ||||||||| Sbjct 280589 AGCGTCCGGCCGTCCTCTAGTTGTTTGCCGGCGAAGATCAACCTCTGCTGATC 280537 >seq487 Length=466406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| |||| ||| ||||||||||| || ||| |||||||| |||||||| || || Sbjct 176122 CCTCCCCTCAACCGAAGCACCAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGC- 176064 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| || | |||||||||||| || ||||| | |||||| || || Sbjct 176063 AAGGGTGCGTCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGG 176004 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | | ||| |||||| |||||| Sbjct 176003 AATTCCCTCCTTGTCCTGAATTTT 175980 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| |||| ||| ||||||| ||||| || |||||| || |||||||| || || Sbjct 176350 CCTCCCCTCAACCGAAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAGTCCGCG 176291 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| |||| |||||||||||||| || || ||||| | |||||| || Sbjct 176290 AGAGTTCGGCCGTCTTCCAATTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTC 176238 Score = 82.4 bits (90), Expect = 6e-11 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| |||| ||| ||||||| ||||| ||| ||||||||| ||||||||||||| | Sbjct 182324 CCTCCCCTCAACCGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCTG-C 182266 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| || | ||||| || ||||| |||| | |||||| || || Sbjct 182265 AAGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGGGG 182206 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | | ||| || ||| ||| || ||| || | || | |||| | || Sbjct 182205 GATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTG---TCGATGGTATCGCTGCTCTC 182149 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | |||| ||| || || ||||| || || || ||||||||||| ||||| || Sbjct 182148 GACCTCGAGCGTGATGGTCTTTCCCGTCAGCGTCTTCACAAAGATCTGCATGTT 182095 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||| ||| |||| ||||||||| | ||| ||| || |||||||||||||| ||| Sbjct 183559 CCTCCTCGCAGACGCAACACCAGATGCAACGTCGACTCTTTTTGAATGTTGTAATCGGCC 183500 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || | || |||| |||||||| || || |||| |||||||| || Sbjct 183499 AGTGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTC 183447 >seq4073 Length=488838 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||| |||| || |||| ||||||||| ||||| || ||||||||||| || Sbjct 173456 ACCTCCTCTGAGCCTCAAAACCAAATGAAGCGTCGATTCCTTTTGGATGTTGTAATCCGC 173515 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || | || || | || || | |||||||||||||| ||||| | |||||| || | Sbjct 173516 CAGAGTG-CGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAG 173574 Query 34019 GCACGCTCTCTTTGTCCATAATTTT 34043 | | | ||| |||||| |||||| Sbjct 173575 GAATCCCCTCCTTGTCCTGAATTTT 173599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| || || || || ||||| || ||| ||| ||||||||||| |||||||| Sbjct 172773 CCTCCTCTAAGACGGAGGACAAGATGCAGGGTGGACTCTTTCTGAATGTTATAATCTGCA 172832 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | |||| | || || | |||||| ||||| || |||| | ||||||||| || Sbjct 172833 AGAGTTCGCCCATCTTCGAGTTGCTTACCGGCGAAGATCAACCTCTGCTGATCGGGAGGA 172892 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGAT-TCGC 34078 | | || |||||| | | | || |||| | || | | || | || | ||| Sbjct 172893 ATACCTTCCTTGTCC-TGAATCTTCGCTTTGACGTTGTCGATGGTGTCCG-AGCTCTCGA 172950 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || ||||| ||||||||||| ||||||||||| Sbjct 172951 CCTCCAGAGTGATGGTCTTGCCGGTCAGTGTTTTCACGAAGATTTGCAT 172999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397042380237874