Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_009819.1 Length=40539 Score E Sequences producing significant alignments: (Bits) Value seq899 87.8 5e-13 >seq899 Length=1674 Score = 87.8 bits (96), Expect = 5e-13 Identities = 207/312 (66%), Gaps = 17/312 (5%) Strand=Plus/Plus Query 8609 GACTTCTCAGCGATTGAGGCTAGGGTGATTGCATGGTTTGCTGGAGAGCAGTGGAGGCTT 8668 |||||||| || |||||||| | |||||||| ||| | ||| |||| ||| | || Sbjct 405 GACTTCTCTGCCATTGAGGCCCGCGTGATTGCCTGGCTGGCTCAGGAGCTTTGGCGCCTG 464 Query 8669 GACGTGTTTTCGACGCACGGGAAAATCTACGAGGCGTCTGCCAGTCAGATGTTCGGAATT 8728 || |||||| | || ||||| || || |||||||||||||| ||| ||||| || | Sbjct 465 GAGGTGTTTGCAACCCACGGCAAGATATACGAGGCGTCTGCATCTCAAATGTTTGGCGTG 524 Query 8729 CCAATTGAGGAGATTGACAA---------GGAA------CTACGCCAAAAGGGCAAAATT 8773 || ||||| |||| | || |||| || | |||||||||||| | Sbjct 525 CCGCTTGAGCGGATTAAGAAAGGCAACCCGGAATATGAGCTCAGGCAAAAGGGCAAAGTC 584 Query 8774 TCAGAGTTAGCACTTGGCTATCAAGGAGGTCCTGGAGCGCTTA-AGCAGATGGGGGCTCT 8832 | ||| | || | ||||| ||||| || | || || | | ||| ||||| || || Sbjct 585 GCGGAGCTGGCCTTGGGCTACCAAGGGGGATCGGGCGCTTTGATTGCA-ATGGGAGCCCT 643 Query 8833 AAATATGGGAGTCAAGGAAGAGGAGCTTCAAGGGTTAGTTGATGACTGGCGCAGGGCCAA 8892 | ||||| | ||| || ||||| | | | ||| | |||||| ||||| || Sbjct 644 TGACATGGGGCTGTCGGAGGATGAGCTGCCGGACATTGTTCAGCGCTGGCGAAGGGCTAA 703 Query 8893 TAAGAAAATCGT 8904 ||| ||| || Sbjct 704 CAAGCGAATTGT 715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129596832999794