Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq487 156 1e-32 seq2625 141 2e-28 seq4017 136 9e-27 seq4073 123 6e-23 seq3072 105 2e-17 seq4020 87.8 4e-12 >seq487 Length=466406 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || ||||| | ||| ||| || ||||| || |||||||| || ||||||||||| Sbjct 176108 AAGCACCAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGTCCGTC 176049 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 ||| | ||| || || ||||||||||| | ||| || | || ||||| || || || Sbjct 176048 TTCGAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCCTCCTTGTC 175989 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 ||| ||||| | ||||| || || || | ||| || || || ||||||||||| || Sbjct 175988 CTGAATTTTAACCTTCACATTGTCGATGGTATCACTGCTCTCGACCTCGAGCGTGATGGT 175929 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 |||||| ||||||||||| ||||| |||||||| || Sbjct 175928 CTTCCCCGTCAGAGTCTTCACGAAGATCTGCATGAT 175893 Score = 145 bits (160), Expect = 2e-29 Identities = 152/197 (77%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| ||||| || || |||||||| ||||| || || ||||| Sbjct 176314 TCCTTTTGGATGTTGTAGTCCGCGAGAGTTCGGCCGTCTTCCAATTGCTTGCCAGCGAAA 176255 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || |||||| ||||| || || ||||| || || ||||||||| Sbjct 176254 ATCAGCCTCTGCTGG---TCTGGGGGAATTCCCTCCTTGTCCTGAATCTTAGCTTTCACG 176198 Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | ||| ||| || || ||||| ||||| ||||| |||||||||||| Sbjct 176197 TTGTCGATGGTGTCGGAGCTC---TCCACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTC 176141 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| |||||||| Sbjct 176140 TTGACGAAGATCTGCAT 176124 Score = 140 bits (154), Expect = 8e-28 Identities = 148/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| ||||| ||||| || ||||| || || || || |||||| Sbjct 176998 TCCTTTTGGATGTTGTAGTCTGCGAGGGTGCGGCCATCTTCCAACTGCTTACCGGCGAAG 176939 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || | |||||||| || || |||||||| || ||||| ||||| Sbjct 176938 ATCAACCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTG 176879 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || |||| ||| ||| || || ||||| ||||| || || || |||||||||||| Sbjct 176878 TCGATAGTGTCGGAGCTC---TCCACCTCGAGGGTGATGGTTTTGCCAGTCAGAGTCTTG 176822 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 176821 ACGAAGATCTGCAT 176808 Score = 127 bits (140), Expect = 5e-24 Identities = 148/197 (75%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| ||||| ||||| || ||||| | || || || |||||| Sbjct 177682 TCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGGCCATCTTCGAGCTGCTTGCCAGCGAAG 177623 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || |||||| |||||||| || ||||| || || || ||||| Sbjct 177622 ATCAGCCTCTGCTGG---TCTGGGGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTCACA 177566 Query 288400 TTTTCTATAGAATCGCTCGA---TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | ||| ||| |||||| || || ||||| ||||| |||||||||||| Sbjct 177565 TTATCGATCGTATC---CGAGCTTTCTACCTCCAGAGTGATGGTCTTGCCGGTCAGAGTC 177509 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| || ||||| Sbjct 177508 TTGACGAAGATTTGCAT 177492 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| || || || || |||||||| ||||| || || ||||| Sbjct 176543 TTCCTTTTGGATGTTGTAGTCCGCAAGAGTTCGGCCGTCTTCCAATTGCTTGCCAGCGAA 176484 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| || |||||| ||||| || || |||||||| || || ||||| Sbjct 176483 GATCAGCCTCTGCTGG---TCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCAC 176427 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | ||| ||| || || | ||||||||||| || || || ||||| Sbjct 176426 GTTGTCGATGGTGTCGGAGCTTTCAACCTCCAAAGTGATCGTCTTGCCCGTGAGGGTCTT 176367 Query 288459 GACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 176366 CACGAAGATTTGCAT 176352 Score = 123 bits (136), Expect = 6e-23 Identities = 147/197 (75%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| ||||| || || || ||||| | || ||||| |||||| Sbjct 177454 TCCTTCTGGATGTTGTAGTCCGCGAGAGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAAG 177395 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || |||||| || ||||| || ||||| || || |||||||| Sbjct 177394 ATCAGCCTCTGCTGG---TCTGGGGGAATCCCTTCCTTGTCCTGAATCTTAGCTTTCACA 177338 Query 288400 TTTTCTATAGAATCGCTCGA---TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | ||| ||| |||||| || || ||||||||||| || |||| ||| Sbjct 177337 TTATCGATCGTATC---CGAGCTTTCTACCTCAAGAGTGATCGTCTTTCCAGTCAAAGTT 177281 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| || ||||| Sbjct 177280 TTGACGAAGATTTGCAT 177264 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || || || ||||| |||||||| | || ||||| || ||| Sbjct 182288 TCCTTCTGGATGTTGTAATCTGCAAGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCAAAG 182229 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || | |||||||| || |||||||| || || || ||||| || Sbjct 182228 ATCAACCTCTGCTGGTCAGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTG 182169 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||||| || || ||||||||||| ||||| || ||||| ||||| || Sbjct 182168 TCGATGGTATCGCTGCTCTCGACCTCGAGCGTGATGGTCTTTCCCGTCAGCGTCTTCACA 182109 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 182108 AAGATCTGCAT 182098 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| ||||| ||||| || ||||| | || || || |||||| Sbjct 182744 TCCTTTTGGATGTTGTAGTCTGCGAGAGTGCGGCCATCTTCGAGCTGCTTACCAGCGAAG 182685 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || ||| || ||||| || ||||||||||| || |||||||| Sbjct 182684 ATCAGCCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGGATTTTTGCCTTCACGTTG 182625 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || | | ||| ||| || ||||| ||||||||||| || || || ||||| ||| Sbjct 182624 TCCACGGTGTCGGAGCTTTCCACCTCGAGAGTGATCGTCTTTCCTGTGAGGGTCTTCACG 182565 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 182564 AAGATTTGCAT 182554 Score = 123 bits (136), Expect = 6e-23 Identities = 156/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||| | ||| |||||||| || || || ||||| || || || || ||||| Sbjct 183541 ACCAGATGCAACGTCGACTCTTTTTGAATGTTGTAATCGGCCAGTGTACGACCATCTTCC 183482 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | || || || |||||||||| ||||| || || ||||| || || |||||| Sbjct 183481 AGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGG 183422 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| |||||||| || || || | || |||| || ||||| || ||||| || Sbjct 183421 ATTTTGGCTTTCACATTGTCGATGGTGTCAGAGCTC---TCCACTTCCAGAGTGATGGTT 183365 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||||||||||||||| || |||||| Sbjct 183364 TTCCCCGTCAGAGTCTTGACGAAGATTTGCATT 183332 Score = 113 bits (124), Expect = 1e-19 Identities = 133/179 (74%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 ||||| ||||||||||| || ||||| | || || || ||||||||||| | ||| || Sbjct 183185 TAGTCTGCGAGCGTGCGGCCATCTTCGAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGG 183126 Query 288358 GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTC 288417 ||| |||||||| || ||||| || || || ||||| || || || | || | Sbjct 183125 TCTGGTGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATCGTGTC---C 183069 Query 288418 GA---TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||| || || || ||||| ||||| ||||||||||| |||||||| || ||||| Sbjct 183068 GAGCTTTCCACCTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTGACGAAGATTTGCAT 183010 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | ||| | ||| || | ||| | ||| || |||||||| |||||||| ||| Sbjct 177262 CCTCCCCTGAGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTATAGTCCGCG 177203 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | || || || ||||||||||| | ||| || |||||| Sbjct 177202 AGAGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGTCTCTGCTGG---TCTGGG 177146 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| || || || || || || || || || || | ||| ||| Sbjct 177145 GGAATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTATCGATGGTGTCGGAGCTTTCC 177086 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || || ||||| ||||| |||||||| Sbjct 177085 ACCTCCAGAGTAATTGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 177036 >seq2625 Length=346021 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || || | || ||||| | ||| ||||||||||| || |||||||| Sbjct 280421 CCTCCTCGCAGCCTCAACACAAGATGCAAAGTGGACTCTTTTTGGATGTTGTAGTCGGCC 280362 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| |||||||| | |||||| || ||||| |||| ||||| || | || Sbjct 280361 AGCGTGCGACCGTCTTCGAGTTGTTTACCGGCGAAAATCAACCGCTGCTGGTCAGGGGGA 280302 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || ||||| || ||||||| ||||| || || || | ||| ||| ||| Sbjct 280301 ATGCCCTCCTTATCTTGAATTTTCGTCTTCACATTGTCGATCGTATCAGAGCT---TTCG 280245 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| || || ||||||||||| |||||||| Sbjct 280244 ACCTCAAGAGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 280195 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||| | ||| || |||||||| || ||||| || ||||| || ||||| || Sbjct 281315 ACCAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCCAGCGTTCGGCCGTCCTCC 281256 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 || || || || || || |||| ||||| ||| ||| |||||||| ||||| ||| Sbjct 281255 AACTGCTTACCGGCAAAAATCAACCGCTGCTGATCTGGTGGAATTCCTTCCTTATCTTGG 281196 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || | |||||||| || |||| |||| ||| || || || ||||| |||||| Sbjct 281195 ATCTTAGTCTTCACGTTGTCGATAGTATCGGAGCTTTCAACCTCCAGGGTGATAGTCTTC 281136 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||||||||| |||||||| Sbjct 281135 CCTGTAAGAGTCTTGACGAAAATCTGCAT 281107 Score = 131 bits (144), Expect = 4e-25 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || ||||| || || | ||| | ||||| || || |||||||| |||||||| Sbjct 280193 CCTCCACGCAGTCTCAGAACCAAATGCAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCC 280134 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||| || || || | ||| || || ||||| |||| ||||| || | ||| Sbjct 280133 AAACTGCGACCATCCTCGAGTTGCTTGCCGGCGAAAATCAACCGCTGCTGGTCAGGGGGG 280074 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCG---CTCGATTC 288422 || || || || ||||||||||| ||| || ||||| || || | |||| ||| || Sbjct 280073 ATGCCCTCCTTGTCCTGGATTTT-GCTCTTGACGTTGTCGATGGTATCGGAACTC---TC 280018 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | |||||||||||||| ||||||||||| ||||| |||||||| Sbjct 280017 GACCTCCAAAGTGATCGTCTTCCCTGTCAGAGTCTTCACGAAGATCTGCAT 279967 Score = 127 bits (140), Expect = 5e-24 Identities = 163/222 (73%), Gaps = 12/222 (5%) Strand=Plus/Minus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 ||| || || ||||||| |||| ||||| || || || |||||||| ||||| || || Sbjct 280638 TCTCAGAACAAGATGAAGCGTGGACTCTTTCTGAATGTTGTAGTCGGCCAGCGTCCGGCC 280579 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTC 288374 ||| |||| |||||| || |||||||||| | ||| ||| |||||| ||||| || Sbjct 280578 GTCCTCTAGTTGTTTGCCGGCGAAGATCAACCTCTGCTGA---TCTGGGGGGATTCCCTC 280522 Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAG 288431 ||||||||||| || | || || || || || | || ||| || || ||||| Sbjct 280521 CTTATCCTGGATCTTAGTCTTGACATTGTCGATGGTGTCAGAACTC---TCGACCTCGAG 280465 Query 288432 CGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| || ||||| || ||||| Sbjct 280464 GGTAATGGTTTTCCCCGTCAGAGTTTTAACGAAAATTTGCAT 280423 Score = 118 bits (130), Expect = 3e-21 Identities = 146/197 (74%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||| || ||||| ||||| || || || ||||| || || || ||||| ||| Sbjct 280841 TCTTTTTGGATGTTGTAGTCCGCGAGGGTACGACCATCTTCCAACTGCTTGCCTGCAAAG 280782 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| || |||| |||||||| || || ||||| ||||| | ||||||| Sbjct 280781 ATCAACCTCTGCTG---ATCTGGAGGGATTCCCTCCTTGTCCTGAATTTTGGTTTTCACG 280725 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 | || || | || ||| ||| || || | |||||| || ||||| || || ||| Sbjct 280724 ATGTCAATTGTGTCAGAGCT---TTCGACCTCCAACGTGATGGTTTTCCCCGTGAGCGTC 280668 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| |||||||| Sbjct 280667 TTCACGAAGATCTGCAT 280651 Score = 109 bits (120), Expect = 1e-18 Identities = 145/199 (73%), Gaps = 12/199 (6%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||||||||| || || || | | ||| || || | ||| ||||||||||| Sbjct 282210 TTCCTTTTGGATATTATAATCCGCTAGAATTCTTCCATCCTCGAGTTGCTTTCCTGCGAA 282151 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| | ||| || ||| |||||||| || || || || || |||| ||||| Sbjct 282150 AATCAACCTCTGCTG---GTCTGGGGGGATTCCCTCCTTGTCTTGAATCTTCGTCTTCAC 282094 Query 288399 GTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 ||| || |||| ||| |||| || || || || || || ||||| || |||| || Sbjct 282093 GTTGTCGATAGTATCTGAGCTC---TCAACCTCAAGAGTAATGGTCTTACCTGTCAAGGT 282037 Query 288456 CTTGACGAATATCTGCATT 288474 ||| ||||| ||||||||| Sbjct 282036 CTTCACGAAAATCTGCATT 282018 Score = 104 bits (114), Expect = 6e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 |||||||| | || || || || |||||||| ||||| ||||| || ||||| || Sbjct 281087 ACGAGATGGAGAGTAGACTCCTTCTGTATATTATAATCGGCCAGCGTTCGGCCGTCCTCC 281028 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCC 288381 || || || ||||| ||||||| | |||||| ||||| || || || ||||| Sbjct 281027 AACTGCTTACCTGCAAAGATCAATCTCTGTTGG---TCTGGAGGAATACCCTCCTTATCT 280971 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || | ||| ||||| || || | ||| ||| || || | ||||| ||| Sbjct 280970 TGGATCTTGGTTTTGACGTTGTCGATGGTGTCGGAGCTTTCGACCTCCAAGGTGATGGTC 280911 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || ||||||||||| Sbjct 280910 TTTCCTGTAAGCGTCTTCACAAATATCTGCAT 280879 >seq4017 Length=874442 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || || || ||||| | || ||||||||||||||| || || || Sbjct 473797 CCACCTCGCAGCCTCAGAACAAGATGCAGAGTTGATTCTTTTTGGATATTGTAATCCGCC 473738 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | || |||||||| ||||||| | ||| ||| || Sbjct 473737 AGGGTTCGTCCATCTTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCGGGAGGA 473678 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| || |||||||| || | ||| || || || || | || ||| ||| Sbjct 473677 ATTCCTTCCTTGTCCTGGATCTTGGTTTTGACATTGTCGATGGTGTCAGAGCT---TTCG 473621 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||||||||||| ||||| ||||| |||||||| Sbjct 473620 ACCTCGAGAGTGATAGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 473571 Score = 113 bits (124), Expect = 1e-19 Identities = 161/224 (72%), Gaps = 12/224 (5%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 || || ||||||||||||| ||| || |||||||| || |||||||| || || | Sbjct 472876 AGCCTCAGTACGAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCAAGGGTCCTC 472817 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCT 288372 ||||| || | || || ||||||||||| || ||||| || ||| ||||| || Sbjct 472816 CCGTCCTCAAGCTGCTTGCCTGCGAAGATTAGTCGCTGCTG---GTCTGGAGGGATACCC 472760 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCTACTTCG 288429 || || || |||||||| | ||||| || || || | ||| ||| || || || Sbjct 472759 TCCTTGTCTTGGATTTTGGTCTTCACATTGTCGATGGTGTCGGAACTC---TCCACCTCC 472703 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 472702 AAGGTGATGGTCTTGCCAGTCAATGTCTTCACGAAGATCTGCAT 472659 Score = 109 bits (120), Expect = 1e-18 Identities = 160/224 (71%), Gaps = 12/224 (5%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| || || || |||| ||| || |||||||| || || || || ||||| | | Sbjct 472420 AGTCTCAGAACCAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCCAGCGTCCTT 472361 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 || || || | || || || || |||||||||||||| || |||||| || || Sbjct 472360 CCATCCTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTG---GTCTGGGGGAATACCC 472304 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCG 288429 || ||||| || ||||| | || || || || || | || |||| || || ||| Sbjct 472303 TCCTTATCTTGAATTTTAGTCTTTACATTGTCGATGGTGTCAGAGCTC---TCCACCTCG 472247 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || |||| |||||||||||| |||||||| Sbjct 472246 AGGGTAATTGTCTTACCCGTCAAAGTCTTGACGAAGATCTGCAT 472203 Score = 107 bits (118), Expect = 5e-18 Identities = 158/221 (71%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 288259 CTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCG 288318 || || ||||| |||| || || |||||||| || |||||||| || || | ||| Sbjct 473101 CTCAGGACGAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTCCTTCCA 473042 Query 288319 TCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCT 288375 ||||| | || || || |||||||||| ||||| ||| ||||| || || || Sbjct 473041 TCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGA---TCTGGAGGAATACCCTCC 472985 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCTACTTCGAGC 288432 ||||| |||||||| | ||||| || || |||| || ||| || || || | Sbjct 472984 TTATCTTGGATTTTAGTCTTCACATTGTCGATAGTGTCAGAACTC---TCCACCTCCAAG 472928 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||||||||| ||||| |||||||| Sbjct 472927 GTTATAGTCTTGCCTGTCAGAGTCTTCACGAAAATCTGCAT 472887 Score = 105 bits (116), Expect = 2e-17 Identities = 143/197 (73%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || |||||||| || || | ||||| || | ||||| ||||||||| Sbjct 472621 TCCTTTTGAATGTTGTAGTCGGCCAGAGTTCTACCGTCCTCAAGCTGTTTACCTGCGAAG 472562 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||||| || || || ||||| ||||| || | ||||| Sbjct 472561 ATCAAACGCTGCTGG---TCTGGGGGAATACCCTCCTTATCTTGGATCTTAGTCTTCACA 472505 Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | ||| ||| || || ||||| || || ||||| || |||| ||| Sbjct 472504 TTATCGATGGTGTCGGAACTC---TCAACCTCGAGAGTAATGGTCTTTCCTGTCAACGTC 472448 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| || ||||| Sbjct 472447 TTGACGAAGATTTGCAT 472431 Score = 105 bits (116), Expect = 2e-17 Identities = 154/215 (72%), Gaps = 12/215 (6%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||||| || || |||||||| ||||||||||| | || | || ||||| Sbjct 473323 ACAAGATGAAGAGTAGACTCCTTTTGGATGTTATAGTCGGCCAAAGTCCTGCCATCTTCG 473264 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCC 288381 | ||||| || |||||||||| ||||| || |||||| || ||||| || || Sbjct 473263 AGCTGTTTCCCAGCGAAGATCAATCGCTGCTGG---TCTGGGGGAATGCCTTCCTTGTCT 473207 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATC 288438 || ||||| | ||||| || || || | ||| ||| || || || | ||||| Sbjct 473206 TGAATTTTGGTCTTCACATTGTCGATGGTGTCGGAACTC---TCCACCTCCAAGGTGATG 473150 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||||||||| ||||| |||||||| Sbjct 473149 GTCTTGCCTGTCAGAGTCTTCACGAAAATCTGCAT 473115 Score = 87.8 bits (96), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||||||||| || | || || || || || | || || || || || Sbjct 473534 TTCCTTTTGAATATTATAGTCTGCCAAGGTACGACCATCCTCGAGCTGCTTACCGGCAAA 473475 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||||| || || || || || ||||||||||| || | |||||||| Sbjct 473474 GATCAATCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTTGTCTTCACGTT 473415 Query 288402 TTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || | ||| ||| ||| || || | ||||| || || || |||| ||||| Sbjct 473414 GTCGATGGTATCTGAGCT---TTCAACCTCCAAAGTGATGGTTTTTCCAGTCAATGTCTT 473358 Query 288459 GACGAATATCTGCAT 288473 ||| || |||||||| Sbjct 473357 GACAAAGATCTGCAT 473343 >seq4073 Length=488838 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||||||||| || || || || || ||||| | || || || |||||| Sbjct 173265 TCTTTCTGTATATTATAGTCTGCCAGAGTTCGCCCATCTTCGAGCTGCTTACCGGCGAAG 173324 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| ||| | |||||||||||||| |||||||||||||| || ||||| Sbjct 173325 ATCAACCTCTGCTGATCAGGAGGGATTCCTTCTTTGTCCTGGATTTTCGCCTTGACGTTG 173384 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||| || || | || || ||||| || |||| |||||||| Sbjct 173385 TCGATCGTGTCGGAGCTTTCCACCTCTAAAGTAATGGTCTTGCCAGTCAAGGTCTTGACA 173444 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 173445 AAAATCTGCAT 173455 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | ||| || | || | ||||| ||| ||| |||||||| || || || || Sbjct 173457 CCTCCTCTGAGCCTCAAAACCAAATGAAGCGTCGATTCCTTTTGGATGTTGTAATCCGCC 173516 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || |||||||| | ||| || | || Sbjct 173517 AGAGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 173576 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || || ||||| ||||| | ||||| || || || | || |||| || Sbjct 173577 ATCCCCTCCTTGTCCTGAATTTTGACCTTCACATTGTCGATCGTGTCAGAGCTC---TCG 173633 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | |||||| ||||| || |||| ||||||||||| |||||||| Sbjct 173634 ACCTCCAACGTGATGGTCTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 173683 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || || || ||||| || || || | || || || || ||| Sbjct 173721 TCCTTCTGGATGTTGTAATCCGCCAGAGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAG 173780 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || | ||||| || || || || || || || ||||||| || Sbjct 173781 ATCAACCTCTGCTGGTCAGGAGGGATCCCCTCCTTGTCTTGAATCTTAACTTTCACATTA 173840 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | |||| ||| || || || | |||||| |||||||| ||||| ||||| Sbjct 173841 TCGATCGTATCGGAGCTC---TCCACCTCCAACGTGATGGTCTTCCCCGTCAGCGTCTTC 173897 Query 288460 ACGAATATCTGCAT 288473 |||||||||||||| Sbjct 173898 ACGAATATCTGCAT 173911 >seq3072 Length=975934 Score = 105 bits (116), Expect = 2e-17 Identities = 167/237 (70%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | || || | || | ||| ||| |||||||||||||| || Sbjct 272040 TGGCCACCACGAAGACGGAGCACCAAGTGCAAAGTGGATTCCTTTTGGATATTATAATCC 271981 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || || | | ||| || || | ||| |||||||| || |||| | ||| || ||| Sbjct 271980 GCTAGAATTCTTCCATCCTCGAGTTGCTTTCCTGCAAAAATCAACCTCTGCTG---GTCT 271924 Query 288364 ---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTC 288417 |||||||| || || || || || |||| |||||||| || |||| ||| |||| Sbjct 271923 GGGGGGATTCCCTCCTTGTCTTGAATCTTCGTCTTCACGTTGTCGATAGTATCTGAGCTC 271864 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || || ||||| || |||| ||||| ||||| ||||||||| Sbjct 271863 ---TCAACCTCAAGAGTAATGGTCTTACCAGTCAAGGTCTTCACGAAAATCTGCATT 271810 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||| || |||||||| |||||||| ||||| || || || || || || || Sbjct 271093 TCTTTTTGGATGTTGTAGTCGGCTAGCGTGCGGCCGTCCTCCAACTGCTTACCAGCAAAA 271034 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| ||||| ||| ||| ||||| || || || || ||||| | |||||| Sbjct 271033 ATCAATCGCTGCTGATCTGGTGGAATTCCCTCCTTGTCTTGTATTTTGGTTTTCAC 270978 >seq4020 Length=382506 Score = 87.8 bits (96), Expect = 4e-12 Identities = 169/235 (72%), Gaps = 26/235 (11%) Strand=Plus/Plus Query 207757 TAGACTATATCTTAAGC------CT--CAAAGAG-ACCCACTGCCGTTTAGTCGTTGAAC 207807 ||||||||||||||||| || | | || |||||||||||| |||||||||||| Sbjct 334501 TAGACTATATCTTAAGCACTACTCTTGCGAGTAGCACCCACTGCCGTCTAGTCGTTGAAC 334560 Query 207808 CTTCTCCATGAA--ATC-CGTTCGGATATTTTAGGAGCTTGGCTGCGGATCGCCCATA-T 207863 |||||| | || || ||| |||||| ||||||||||||| |||| | Sbjct 334561 TGCATCCATGGAGCATGACGCTCG------TTAGGA-CTTGGCTGCGGATTATCCATTGT 334613 Query 207864 ATC-TCTGTGA-ATTTTTACCGTACAC-GAGTTCTGCTCTCGTCCATCATA-ATGTTTCC 207919 | | || | | | ||||||| ||| | | | | | |||| ||| ||| |||||||| Sbjct 334614 AGCATCCTTCATACTTTTACCATACCCAGGGCTATTAGCTCGGCCACCATCTATGTTTCC 334673 Query 207920 ACGATGATTTGGT-ATCACAAGCTTTAGGGGGTTCCCGCAATTTGACAGTGTCGC 207973 | || | ||||| || | | |||||||| || ||||||||||||||||||||| Sbjct 334674 ATGACGGCTTGGTGATGA-AGGCTTTAGGAAGTCCCCGCAATTTGACAGTGTCGC 334727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179591872049886