Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4020 87.8 4e-12 >seq4020 Length=382506 Score = 87.8 bits (96), Expect = 4e-12 Identities = 169/235 (72%), Gaps = 26/235 (11%) Strand=Plus/Plus Query 183559 TAGACTATATCTTAAGC------CT--CAAAGAG-ACCCACTGCCGTTTAGTCGTTGAAC 183609 ||||||||||||||||| || | | || |||||||||||| |||||||||||| Sbjct 334501 TAGACTATATCTTAAGCACTACTCTTGCGAGTAGCACCCACTGCCGTCTAGTCGTTGAAC 334560 Query 183610 CTTCTCCATGAA--ATC-CGTTCGGATATTTTAGGAGCTTGGCTGCGGATCGCCCATA-T 183665 |||||| | || || ||| |||||| ||||||||||||| |||| | Sbjct 334561 TGCATCCATGGAGCATGACGCTCG------TTAGGA-CTTGGCTGCGGATTATCCATTGT 334613 Query 183666 ATC-TCTGTGA-ATTTTTACCGTACAC-GAGTTCTGCTCTCGTCCATCATA-ATGTTTCC 183721 | | || | | | ||||||| ||| | | | | | |||| ||| ||| |||||||| Sbjct 334614 AGCATCCTTCATACTTTTACCATACCCAGGGCTATTAGCTCGGCCACCATCTATGTTTCC 334673 Query 183722 ACGATGATTTGGT-ATCACAAGCTTTAGGGGGTTCCCGCAATTTGACAGTGTCGC 183775 | || | ||||| || | | |||||||| || ||||||||||||||||||||| Sbjct 334674 ATGACGGCTTGGTGATGA-AGGCTTTAGGAAGTCCCCGCAATTTGACAGTGTCGC 334727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102821541500950