Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_009993.2 Length=53746 Score E Sequences producing significant alignments: (Bits) Value seq2509 105 2e-18 >seq2509 Length=1735 Score = 105 bits (116), Expect = 2e-18 Identities = 126/166 (76%), Gaps = 15/166 (9%) Strand=Plus/Plus Query 15199 TCGCGCAGGCCGAATCCGGCGGCAACTGGGCGATCAACACCGGCAACGGGTACTACGGCG 15258 |||| ||| ||| |||||||| ||||||||||| |||| |||||||| |||| ||| | Sbjct 1340 TCGCCCAGTGCGAGTCCGGCGGGGACTGGGCGATCGACACGGGCAACGGCTACTCCGGTG 1399 Query 15259 GGTTGCAGTTCGACCAACCGACCTGGGACGCCTACAAACCGGCGGGCGCACCGGCCCGGG 15318 || ||||||||||||| | ||||||| ||||| ||||| |||||||| | || Sbjct 1400 GGCTGCAGTTCGACCAGGCCACCTGGGCGGCCTA-----CGGCG---GCACCGGCTC-GG 1450 Query 15319 CCGACATGGCC--CCGCG-GGAGACACAGATCGCCGCGGCGGAGAA 15361 | || |||| ||||| |||| |||||||| | |||||||| Sbjct 1451 CGCACGAGGCCAGCCGCGAGGAG---CAGATCGCGGTCGCGGAGAA 1493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171857156780152